@Override
public boolean remove(MetabolicReaction rxn) {
// remove links to metabolites
for (MetabolicParticipant p : rxn.getParticipants()) {
Metabolite m = p.getMolecule();
participantMap.get(m.getIdentifier()).remove(rxn);
if (participantMap.get(m.getIdentifier()).isEmpty()) {
participantMap.removeAll(m.getIdentifier());
}
}
reactionMap.remove(rxn.getIdentifier(), rxn);
return super.remove(rxn);
}
/**
* Returns a list of reactions that contain Metabolite m If not mapping is found an empty
* collection is returned
*/
public Collection<MetabolicReaction> getReactions(Metabolite m) {
return participantMap.get(m.getIdentifier());
}
/** @inheritDoc */
public boolean removeKey(Metabolite m, Reaction reaction) {
return participantMap.remove(m.getIdentifier(), reaction);
}