public void addAtom(AtomSite site, Color c, float r) {
Point3d p = new Point3d(site.x, site.y, site.z);
AtomType at = new AtomType(site.symbol);
float radius = (float) at.atomicRadius();
if (radius == 0) radius = 0.3f;
if (r != -1) radius = r;
Color3f color = new Color3f(c == null ? at.color() : c);
new Atom(this.deltaroot, p, radius, color, true);
}
public void setAtoms(AtomSite[] sites, Color c, float r) {
this.removeAll();
for (int i = 0; i < sites.length; i++) {
Point3d p = new Point3d(sites[i].x, sites[i].y, sites[i].z);
AtomType at = new AtomType(sites[i].symbol);
float radius = (float) at.atomicRadius();
if (radius == 0) radius = 0.3f;
if (r != -1) radius = r;
Color3f color = new Color3f(c == null ? at.color() : c);
new Atom(this.deltaroot, p, radius, color, true);
}
}