public SpotHelper(
IInPUT input,
IDesign config,
String studyId,
boolean minProblem,
List<IDesign> problems,
boolean resumeExisting)
throws InPUTException {
experimentalFolder = initExperimentalFolder(studyId, config, problems, resumeExisting);
this.studyId = experimentalFolder.getName();
investigationId = initExperimentId(studyId, config, experimentalFolder);
this.config = initConfig(investigationId, config);
printInfo(config, minProblem);
this.input = input;
initInverseFunction();
checkSPOTIsInstalled();
inputROI = new SpotROI(input);
outputROI = new SpotROI(input.getOutputSpace());
currentRES = new SpotRES(inputROI, outputROI);
if (resumeExisting) loadSPOTWorkspace();
else initExperimentalFolder();
}
public void initSPOTinitialDesign() {
initInverseFunction();
runCommand("inputConfig<-spot(inputFile,\"init\")", false);
}