// Constructor for PET
// it also works for fMRI
public ComputeMultiblockPlsMain(
int imagingType,
ConcatenateDatamat st,
int numBootstraps,
int numPermutations,
double confidenceLevel,
String behaviorFilename,
String resultsFile,
StreamedProgressHelper progress)
throws Exception {
RRIBootstrapCheck bootCheck;
if (imagingType == 2) {
bootCheck =
new RRIBootstrapCheck(st.subjectGroup, st.num_cond_lst[0], numBootstraps, false, 50.0);
} else {
bootCheck =
new RRIBootstrapCheck(st.subjectGroup, st.numConditions, numBootstraps, false, 50.0);
}
int[] bscan = MLFuncs.range(0, st.numConditions - 1);
progress.startTask("Computing reference multiblock PLS", "Ref. multiblock PLS");
// old calling for fMRI only
// ComputeMultiblockPls mainPls = new ComputeMultiblockPls(imagingType, st.datamat,
// st.behavData,
// st.posthocData, st.behavDataList, st.newDataList, st.numSubjectList, st.numConditions,
// bscan);
// new calling for fMRI and PET
ComputeMultiblockPls mainPls = new ComputeMultiblockPls(imagingType, st, bscan);
progress.endTask(); // ref. multiblock PLS
PermutationResult permResult =
new ComputeMultiblockPermutationPls(
imagingType, mainPls, st, numPermutations, bscan, progress)
.permResult;
// old calling for only fMRI
// BootstrapResult bootResult = new ComputeMultiblockBootstrapPls(mainPls, st.datamat,
// st.numConditions, st.eventList, numBootstraps, st.subjectGroup,
// bootCheck.minSubjectsPerGroup,
// bootCheck.isBootstrapSamples, bootCheck.bootstrapSamples, bootCheck.newNumBootstraps, bscan,
// confidenceLevel, progress).bootResult;
// new Call for fMRI and PET
BootstrapResult bootResult =
new ComputeMultiblockBootstrapPls(
imagingType,
mainPls,
st,
numBootstraps,
bootCheck.minSubjectsPerGroup,
bootCheck.isBootstrapSamples,
bootCheck.bootstrapSamples,
bootCheck.newNumBootstraps,
bscan,
confidenceLevel,
progress)
.bootResult;
progress.startTask("Saving the results...", "Saving results");
new ResultSaver(
st,
numBootstraps,
numPermutations,
confidenceLevel,
behaviorFilename,
resultsFile,
permResult,
mainPls,
bootResult,
bscan);
progress.endTask(); // save results
}
// constructor for fMRI
public ComputeMultiblockPlsMain(
ConcatenateDatamat st,
int numBootstraps,
int numPermutations,
double confidenceLevel,
String behaviorFilename,
String resultsFile,
StreamedProgressHelper progress)
throws Exception {
RRIBootstrapCheck bootCheck =
new RRIBootstrapCheck(st.subjectGroup, st.numConditions, numBootstraps, false, 50.0);
int[] bscan = MLFuncs.range(0, st.numConditions - 1);
progress.startTask("Computing reference multiblock PLS", "Ref. multiblock PLS");
ComputeMultiblockPls mainPls =
new ComputeMultiblockPls(
st.datamat,
st.behavData,
st.posthocData,
st.behavDataList,
st.newDataList,
st.numSubjectList,
st.numConditions,
bscan);
progress.endTask(); // ref. multiblock PLS
PermutationResult permResult =
new ComputeMultiblockPermutationPls(
mainPls,
st.datamat,
st.posthocData,
st.numConditions,
numPermutations,
st.subjectGroup,
bscan,
progress)
.permResult;
BootstrapResult bootResult =
new ComputeMultiblockBootstrapPls(
mainPls,
st.datamat,
st.numConditions,
st.eventList,
numBootstraps,
st.subjectGroup,
bootCheck.minSubjectsPerGroup,
bootCheck.isBootstrapSamples,
bootCheck.bootstrapSamples,
bootCheck.newNumBootstraps,
bscan,
confidenceLevel,
progress)
.bootResult;
progress.startTask("Saving the results...", "Saving results");
new ResultSaver(
st,
numBootstraps,
numPermutations,
confidenceLevel,
behaviorFilename,
resultsFile,
permResult,
mainPls,
bootResult,
bscan);
progress.endTask(); // save results
}