/**
* Runs the command without permission, data and concurrency checks.
*
* @param ctx database context
* @param os output stream
* @return result of check
*/
public boolean run(final Context ctx, final OutputStream os) {
perf = new Performance();
context = ctx;
prop = ctx.prop;
mprop = ctx.mprop;
out = PrintOutput.get(os);
try {
return run();
} catch (final ProgressException ex) {
// process was interrupted by the user or server
abort();
return error(INTERRUPTED);
} catch (final Throwable ex) {
// unexpected error
Performance.gc(2);
abort();
if (ex instanceof OutOfMemoryError) {
Util.debug(ex);
return error(OUT_OF_MEM + (createWrite() ? H_OUT_OF_MEM : ""));
}
return error(Util.bug(ex) + NL + info.toString());
} finally {
// flushes the output
try {
if (out != null) out.flush();
} catch (final IOException ignored) {
}
}
}
/**
* Returns canonical link to a bitstream in the item.
*
* @param item The DSpace Item that the bitstream is part of
* @param bitstream The bitstream to link to
* @returns a String link to the bitstream
*/
private String makeBitstreamLink(Item item, Bitstream bitstream) {
String name = bitstream.getName();
StringBuilder result = new StringBuilder(contextPath);
result.append("/bitstream/item/").append(String.valueOf(item.getID()));
// append name although it isn't strictly necessary
try {
if (name != null) {
result.append("/").append(Util.encodeBitstreamName(name, "UTF-8"));
}
} catch (UnsupportedEncodingException uee) {
// just ignore it, we don't have to have a pretty
// name on the end of the url because the sequence id will
// locate it. However it means that links in this file might
// not work....
}
result.append("?sequence=").append(String.valueOf(bitstream.getSequenceID()));
return result.toString();
}
/**
* Constructor.
*
* @param ex exception
* @param level type
* @param schema schema url
*/
ErrorInfo(final SAXException ex, final String level, final IO schema) {
this.level = level;
String m = ex.getMessage();
Throwable e = ex;
if (m.contains("Exception:")) {
// may be recursively called if external validator (e.g. Saxon) is used
e = Util.rootException(e);
if (e instanceof SAXException) m = e.getLocalizedMessage();
}
if (ex instanceof SAXParseException) {
final SAXParseException se = (SAXParseException) ex;
final String id = se.getSystemId();
if (id != null) {
final IO io = IO.get(id);
if (schema == null || !io.isDir() && !schema.equals(io)) url = id;
}
line = se.getLineNumber();
column = se.getColumnNumber();
}
message = m;
}
@Override
protected boolean run() {
final boolean create = context.user.has(Perm.CREATE);
String path = MetaData.normPath(args[0]);
if (path == null || path.endsWith(".")) return error(NAME_INVALID_X, args[0]);
if (in == null) {
final IO io = IO.get(args[1]);
if (!io.exists() || io.isDir()) return error(RES_NOT_FOUND_X, create ? io : args[1]);
in = io.inputSource();
// set/add name of document
if ((path.isEmpty() || path.endsWith("/")) && !(io instanceof IOContent)) path += io.name();
}
// ensure that the final name is not empty
if (path.isEmpty()) return error(NAME_INVALID_X, path);
// ensure that the name is not empty and contains no trailing dots
final Data data = context.data();
if (data.inMemory()) return error(NO_MAINMEM);
final IOFile file = data.meta.binary(path);
if (path.isEmpty() || path.endsWith(".") || file == null || file.isDir())
return error(NAME_INVALID_X, create ? path : args[0]);
// start update
if (!data.startUpdate()) return error(DB_PINNED_X, data.meta.name);
try {
store(in, file);
return info(QUERY_EXECUTED_X_X, "", perf);
} catch (final IOException ex) {
return error(FILE_NOT_STORED_X, Util.message(ex));
} finally {
data.finishUpdate();
}
}
/**
* Converts an HTML document to XML.
*
* @param io io reference
* @param opts html options
* @return parser
* @throws IOException I/O exception
*/
private static IO toXML(final IO io, final HtmlOptions opts) throws IOException {
// reader could not be initialized; fall back to XML
if (READER == null) return io;
try {
// tries to extract the encoding from the input
final TextInput ti = new TextInput(io);
String enc = ti.encoding();
final byte[] content = ti.content();
// looks for a charset definition
final byte[] encoding = token("charset=");
int cs = indexOf(content, encoding);
if (cs > 0) {
// extracts the encoding string
cs += encoding.length;
int ce = cs;
final int cl = content.length;
while (++ce < cl && content[ce] > 0x28) ;
enc = string(substring(content, cs, ce));
}
// define input
final InputSource is = new InputSource(new ArrayInput(content));
is.setEncoding(supported(enc) ? normEncoding(enc) : UTF8);
// define output
final StringWriter sw = new StringWriter();
final XMLReader reader = (XMLReader) Reflect.get(READER);
final Object writer = Reflect.get(WRITER, sw);
// set TagSoup options
if (opts.get(HtmlOptions.HTML)) {
reader.setFeature("http://xml.org/sax/features/namespaces", false);
opt("method", "html");
opt("omit-xml-declaration", "yes");
}
if (opts.get(HtmlOptions.NONS))
reader.setFeature("http://xml.org/sax/features/namespaces", false);
if (opts.get(HtmlOptions.OMITXML)) opt("omit-xml-declaration", "yes");
if (opts.get(HtmlOptions.NOBOGONS)) reader.setFeature(FEATURES + "ignore-bogons", true);
if (opts.get(HtmlOptions.NODEFAULTS))
reader.setFeature(FEATURES + "default-attributes", false);
if (opts.get(HtmlOptions.NOCOLONS)) reader.setFeature(FEATURES + "translate-colons", true);
if (opts.get(HtmlOptions.NORESTART)) reader.setFeature(FEATURES + "restart-elements", false);
if (opts.get(HtmlOptions.IGNORABLE))
reader.setFeature(FEATURES + "ignorable-whitespace", true);
if (opts.get(HtmlOptions.EMPTYBOGONS)) reader.setFeature(FEATURES + "bogons-empty", true);
if (opts.get(HtmlOptions.ANY)) reader.setFeature(FEATURES + "bogons-empty", false);
if (opts.get(HtmlOptions.NOROOTBOGONS)) reader.setFeature(FEATURES + "root-bogons", false);
if (opts.get(HtmlOptions.NOCDATA)) reader.setFeature(FEATURES + "cdata-elements", false);
if (opts.get(HtmlOptions.LEXICAL))
reader.setProperty("http://xml.org/sax/properties/lexical-handler", writer);
if (opts.contains(HtmlOptions.METHOD)) opt("method", opts.get(HtmlOptions.METHOD));
if (opts.contains(HtmlOptions.DOCTYPESYS))
opt("doctype-system", opts.get(HtmlOptions.DOCTYPESYS));
if (opts.contains(HtmlOptions.DOCTYPEPUB))
opt("doctype-public", opts.get(HtmlOptions.DOCTYPEPUB));
if (opts.contains(HtmlOptions.ENCODING)) is.setEncoding(opts.get(HtmlOptions.ENCODING));
// end TagSoup options
reader.setContentHandler((ContentHandler) writer);
reader.parse(is);
return new IOContent(token(sw.toString()), io.name());
} catch (final SAXException ex) {
Util.errln(ex);
return io;
}
}
