@SuppressWarnings("unchecked")
@Override
protected void parseFile(String[] argFileString, IMetadataFieldSet argDefaultFields)
throws InvalidDendroFileException {
defaults = (TrimsToTridasDefaults) argDefaultFields;
// TODO run the 'metadata' through the defaults, as
// the user may have specified his own metadata
// Extract 'metadata' ;-)
String userid = argFileString[0].trim();
SafeIntYear startYear = null;
try {
startYear = new SafeIntYear(argFileString[2].trim());
} catch (NumberFormatException e) {
}
// Extract data
ArrayList<TridasValue> ringWidthValues = new ArrayList<TridasValue>();
for (int i = 3; i < argFileString.length; i++) {
TridasValue v = new TridasValue();
if (argFileString[i].startsWith(" ")) {
if (argFileString[i].trim().equals("999")) {
break;
}
v.setValue(argFileString[i].trim());
ringWidthValues.add(v);
log.debug("value = " + String.valueOf(argFileString[i]));
} else {
throw new InvalidDendroFileException(I18n.getText("trims.expectingSpace"), i);
}
}
// Now build up our measurementSeries
TridasMeasurementSeries series = defaults.getMeasurementSeriesWithDefaults();
TridasUnit units = new TridasUnit();
// Set units to 1/100th mm. Is this always the case?
units.setNormalTridas(NormalTridasUnit.HUNDREDTH_MM);
// Build identifier for series
TridasIdentifier seriesId = new ObjectFactory().createTridasIdentifier();
seriesId.setValue(UUID.randomUUID().toString());
seriesId.setDomain(
defaults.getDefaultValue(TridasMandatoryField.IDENTIFIER_DOMAIN).getStringValue());
// Build interpretation group for series
TridasInterpretation interp = new TridasInterpretation();
interp.setFirstYear(startYear.toTridasYear(DatingSuffix.AD));
interp.setLastYear(startYear.add(ringWidthValues.size() - 1).toTridasYear(DatingSuffix.AD));
// Add values to nested value(s) tags
TridasValues valuesGroup = new TridasValues();
valuesGroup.setValues(ringWidthValues);
valuesGroup.setUnit(units);
GenericDefaultValue<TridasVariable> variable =
(GenericDefaultValue<TridasVariable>)
defaults.getDefaultValue(TridasMandatoryField.MEASUREMENTSERIES_VARIABLE);
valuesGroup.setVariable(variable.getValue());
ArrayList<TridasValues> valuesGroupList = new ArrayList<TridasValues>();
valuesGroupList.add(valuesGroup);
// Add all the data to the series
series.setValues(valuesGroupList);
series.setInterpretation(interp);
series.setIdentifier(seriesId);
series.setLastModifiedTimestamp(DateUtils.getTodaysDateTime());
series.setDendrochronologist(userid);
// Add series to our list
mseriesList.add(series);
}
@Override
public String[] saveToString() {
ArrayList<String> file = new ArrayList<String>();
String line = "'" + defaults.getStringDefaultValue(OxDefaultFields.SERIESCODE).getStringValue();
line += " <" + defaults.getIntegerDefaultValue(OxDefaultFields.FIRSTYEAR).getStringValue();
line += "-" + defaults.getIntegerDefaultValue(OxDefaultFields.LASTYEAR).getStringValue() + "> ";
line += defaults.getStringDefaultValue(OxDefaultFields.DESCRIPTION).getStringValue() + "'";
file.add(line);
line = defaults.getIntegerDefaultValue(OxDefaultFields.SERIESLENGTH).getStringValue() + ",";
line += defaults.getIntegerDefaultValue(OxDefaultFields.STARTYEAR).getStringValue();
file.add(line);
// Data
Integer col = 0;
line = "";
Boolean hasCounts = false;
for (TridasValue val : valuesGroup.getValues()) {
col++;
if (col > 10) {
file.add(line.substring(0, line.length() - 1));
line = "";
col = 1;
}
line += StringUtils.leftPad(val.getValue(), 3) + " ";
if (val.isSetCount()) hasCounts = true;
}
if (line.length() > 0) {
file.add(line.substring(0, line.length() - 1));
}
file.add("");
// Add counts section if applicable
if (hasCounts) {
col = 0;
line = "";
for (TridasValue val : valuesGroup.getValues()) {
col++;
if (col > 10) {
file.add(line.substring(0, line.length() - 1));
line = "";
col = 1;
}
if (val.isSetCount()) {
line += StringUtils.leftPad(val.getCount().toString(), 3) + " ";
} else {
line += StringUtils.leftPad("0".toString(), 3) + " ";
defaults.addConversionWarning(
new ConversionWarning(WarningType.INVALID, I18n.getText("oxford.countsEmpty")));
}
}
if (line.length() > 0) {
file.add(line.substring(0, line.length() - 1));
}
}
// Comments
if (defaults.getStringDefaultValue(OxDefaultFields.COMMENTS).getValue() != null) {
file.add(defaults.getStringDefaultValue(OxDefaultFields.COMMENTS).getStringValue());
}
// Return file
return file.toArray(new String[0]);
}
