@SuppressWarnings("unchecked")
private void traverseTaxonTree(StringBuffer buff, MappedNode curr) {
if (curr != null) {
boolean emptyOrInternal = StringUtils.notEmpty(curr.getName());
if (emptyOrInternal) {
buff.append("<li>" + curr.getName());
}
List children = curr.getChildren();
if (!children.isEmpty()) {
if (emptyOrInternal) {
buff.append("<ul>");
}
for (Iterator itr = children.iterator(); itr.hasNext(); ) {
MappedNode child = (MappedNode) itr.next();
traverseTaxonTree(buff, child);
}
if (emptyOrInternal) {
buff.append("</ul>");
}
}
if (emptyOrInternal) {
buff.append("</li>");
}
}
}
@SuppressWarnings("unchecked")
private String getCopyrightOwnersIdString(Collection contributors) {
ArrayList names = new ArrayList();
Iterator it = contributors.iterator();
while (it.hasNext()) {
PageContributor contr = (PageContributor) it.next();
if (contr.getIsCopyOwner()) {
names.add(contr.getContributor().getId());
}
}
return StringUtils.returnCommaJoinedString(names);
}
@SuppressWarnings("unchecked")
public void processContent() {
Element page = new Element(PageContentElements.PAGE, ContentPreparer.NS);
page.addAttribute(new Attribute(PageContentAttributes.ID, "" + getMappedPage().getPageId()));
String pageNodeNameUrl = getMappedPage().getMappedNode().getName();
try {
pageNodeNameUrl = URLEncoder.encode(pageNodeNameUrl, "UTF-8");
} catch (Exception e) {
e.printStackTrace();
}
String nodeIdString = "" + getMappedPage().getMappedNode().getId();
pageNodeNameUrl =
StringUtils.notEmpty(pageNodeNameUrl) ? pageNodeNameUrl + "/" + nodeIdString : nodeIdString;
String pageUrl = "http://tolweb.org/" + pageNodeNameUrl;
page.addAttribute(new Attribute(PageContentAttributes.PAGE_URL, pageUrl));
page.addAttribute(
new Attribute(PageContentAttributes.PAGE_STATUS, getMappedPage().getStatus()));
page.addAttribute(
new Attribute(
PageContentAttributes.DATE_CREATED,
getSafeString(getMappedPage().getFirstOnlineString())));
page.addAttribute(
new Attribute(
PageContentAttributes.DATE_CHANGED,
safeToString(getMappedPage().getContentChangedDate())));
Element group = new Element(PageContentElements.GROUP, ContentPreparer.NS);
page.appendChild(group);
group.addAttribute(
new Attribute(PageContentAttributes.NODE, "" + getMappedPage().getMappedNode().getId()));
group.addAttribute(
new Attribute(
PageContentAttributes.EXTINCT,
(getMappedPage().getMappedNode().getExtinct() == 2) ? "true" : "false"));
group.addAttribute(
new Attribute(
PageContentAttributes.PHYLESIS,
getPhylesisString(getMappedPage().getMappedNode().getPhylesis())));
group.addAttribute(
new Attribute(
PageContentAttributes.LEAF,
getMappedPage().getMappedNode().getIsLeaf() ? "true" : "false"));
Element groupDesc = new Element(PageContentElements.GROUP_DESCRIPTION, ContentPreparer.NS);
String groupDescText = getMappedPage().getMappedNode().getDescription();
groupDesc.appendChild(new Text(groupDescText));
if (StringUtils.notEmpty(groupDescText)) {
group.appendChild(groupDesc);
}
Element groupCmt = new Element(PageContentElements.GROUP_COMMENT, ContentPreparer.NS);
String groupCmtText = getMappedPage().getLeadText();
groupCmt.appendChild(new Text(groupCmtText));
if (StringUtils.notEmpty(groupCmtText)) {
group.appendChild(groupCmt);
}
Element names = new Element(PageContentElements.NAMES, ContentPreparer.NS);
page.appendChild(names);
Element name = new Element(PageContentElements.NAME, ContentPreparer.NS);
names.appendChild(name);
name.appendChild(new Text(getMappedPage().getMappedNode().getName()));
name.addAttribute(
new Attribute(
PageContentAttributes.ITALICIZE_NAME,
Boolean.valueOf(getMappedPage().getMappedNode().getItalicizeName()).toString()));
name.addAttribute(
new Attribute(
PageContentAttributes.AUTHORITY,
getSafeString(getMappedPage().getMappedNode().getNameAuthority())));
name.addAttribute(
new Attribute(
PageContentAttributes.AUTH_DATE,
safeToString(getMappedPage().getMappedNode().getAuthorityDate())));
name.addAttribute(
new Attribute(
PageContentAttributes.NAME_COMMENT,
getSafeString(getMappedPage().getMappedNode().getNameComment())));
name.addAttribute(
new Attribute(
PageContentAttributes.NEW_COMBINATION,
Boolean.valueOf(getMappedPage().getMappedNode().getIsNewCombination()).toString()));
name.addAttribute(
new Attribute(
PageContentAttributes.COMBINATION_AUTHOR,
getSafeString(getMappedPage().getMappedNode().getCombinationAuthor())));
name.addAttribute(
new Attribute(
PageContentAttributes.COMBINATION_DATE,
safeToString(getMappedPage().getMappedNode().getCombinationDate())));
Element othernames = new Element(PageContentElements.OTHERNAMES, ContentPreparer.NS);
SortedSet otherNamesSet = getMappedPage().getMappedNode().getSynonyms();
for (Iterator itr = otherNamesSet.iterator(); itr.hasNext(); ) {
MappedOtherName moname = (MappedOtherName) itr.next();
Element othername = new Element(PageContentElements.OTHERNAME, ContentPreparer.NS);
othername.addAttribute(new Attribute(PageContentAttributes.ID, "" + moname.getId()));
othername.addAttribute(
new Attribute(
PageContentAttributes.ITALICIZE_NAME,
Boolean.valueOf(moname.getItalicize()).toString()));
othername.addAttribute(
new Attribute(PageContentAttributes.AUTHORITY, getSafeString(moname.getAuthority())));
othername.addAttribute(
new Attribute(PageContentAttributes.AUTH_DATE, safeToString(moname.getAuthorityYear())));
othername.addAttribute(
new Attribute(PageContentAttributes.NAME_COMMENT, getSafeString(moname.getComment())));
othername.addAttribute(
new Attribute(
PageContentAttributes.IS_IMPORTANT,
Boolean.valueOf(moname.getIsImportant()).toString()));
othername.addAttribute(
new Attribute(
PageContentAttributes.IS_PREFERRED,
Boolean.valueOf(moname.getIsPreferred()).toString()));
othername.addAttribute(
new Attribute(PageContentAttributes.SEQUENCE, safeToString(moname.getOrder())));
}
if (!otherNamesSet.isEmpty()) {
names.appendChild(othernames);
}
List children = getMappedPage().getMappedNode().getChildren();
boolean isTerminal = children != null && children.isEmpty();
// add this if not a leaf or writeaslist is false... or is terminal (e.g. no children)
if (getMappedPage().getMappedNode().getIsLeaf() && !isTerminal) {
Element subgroups = new Element(PageContentElements.SUBGROUPS, ContentPreparer.NS);
page.appendChild(subgroups);
if (!getMappedPage().getWriteAsList()) {
Element treeimage = new Element(PageContentElements.TREEIMAGE, ContentPreparer.NS);
ContributorLicenseInfo currDefault =
new ContributorLicenseInfo(ContributorLicenseInfo.TREE_IMAGE_LICENSE);
treeimage.addAttribute(
new Attribute(PageContentAttributes.LICENSE, currDefault.toShortString()));
String treeImageName = getMappedPage().getGroupName().replaceAll("\\s", "_");
treeimage.appendChild(
new Text("http://www.tolweb.org/Public/treeImages/" + treeImageName + ".png"));
subgroups.appendChild(treeimage);
}
Element newicktree = new Element(PageContentElements.NEWICKTREE, ContentPreparer.NS);
subgroups.appendChild(newicktree);
Element taxonlist = new Element(PageContentElements.TAXON_LIST, ContentPreparer.NS);
taxonlist.appendChild(new Text(StringEscapeUtils.escapeXml(getTaxonListAsHTML())));
subgroups.appendChild(taxonlist);
Element treecomment = new Element(PageContentElements.TREE_COMMENT, ContentPreparer.NS);
subgroups.appendChild(treecomment);
treecomment.appendChild(
new Text(StringEscapeUtils.escapeXml(getMappedPage().getPostTreeText())));
}
Element sections = new Element(PageContentElements.SECTIONS, ContentPreparer.NS);
page.appendChild(sections);
SortedSet textSections = getMappedPage().getTextSections();
for (Iterator itr = textSections.iterator(); itr.hasNext(); ) {
MappedTextSection mtxt = (MappedTextSection) itr.next();
Element section = new Element(PageContentElements.SECTION, ContentPreparer.NS);
section.addAttribute(new Attribute(PageContentAttributes.ID, "" + mtxt.getTextSectionId()));
section.addAttribute(new Attribute(PageContentAttributes.SECTION_TITLE, mtxt.getHeading()));
section.addAttribute(
new Attribute(PageContentAttributes.PAGE_ORDER, safeToString(mtxt.getOrder())));
section.addAttribute(
new Attribute(PageContentAttributes.COPYRIGHT_DATE, getMappedPage().getCopyrightDate()));
section.addAttribute(
new Attribute(
PageContentAttributes.LICENSE,
getLicenseShortName(getMappedPage().getUsePermission())));
section.addAttribute(
new Attribute(
PageContentAttributes.AUTHORS,
getAuthorsIdString(getMappedPage().getContributors())));
section.addAttribute(
new Attribute(
PageContentAttributes.CORRESPONDENTS,
getCorrespondentsIdString(getMappedPage().getContributors())));
section.addAttribute(
new Attribute(
PageContentAttributes.COPYRIGHT_OWNERS,
getCopyrightOwnersIdString(getMappedPage().getContributors())));
section.addAttribute(
new Attribute(
PageContentAttributes.OTHER_COPYRIGHT,
getSafeString(getMappedPage().getCopyrightHolder())));
section.addAttribute(
new Attribute(
PageContentAttributes.CONTENT_CHANGED,
safeToString(getMappedPage().getContentChangedDate())));
// add the section-text text element
Element sectionText = new Element(PageContentElements.SECTION_TEXT, ContentPreparer.NS);
sectionText.appendChild(new Text(processSectionText(mtxt.getText(), pageUrl)));
section.appendChild(sectionText);
Element sectionMedia = new Element(PageContentElements.SECTION_MEDIA, ContentPreparer.NS);
processSectionMedia(sectionMedia);
section.appendChild(sectionMedia);
// add the section-source element
Element sectionSource = new Element(PageContentElements.SECTION_SOURCE, ContentPreparer.NS);
// TODO add attribute data to section-source
section.appendChild(sectionSource);
String sectionAnchor = mtxt.getHeadingNoSpaces();
sectionSource.addAttribute(new Attribute(PageContentAttributes.SOURCE_COLLECTION, "0"));
sectionSource.addAttribute(
new Attribute(PageContentAttributes.SOURCE_TITLE, mtxt.getHeading()));
sectionSource.addAttribute(
new Attribute(
PageContentAttributes.SOURCE_URL,
"http://tolweb.org/" + pageNodeNameUrl + "#" + sectionAnchor));
sectionSource.addAttribute(new Attribute(PageContentAttributes.MORE_SOURCE, "[future-use]"));
sections.appendChild(section);
}
Element refs = new Element(PageContentElements.REFERENCES, ContentPreparer.NS);
page.appendChild(refs);
TextPreparer txtPrep = new TextPreparer();
List refsList = txtPrep.getNewlineSeparatedList(getMappedPage().getReferences());
for (Iterator itr = refsList.iterator(); itr.hasNext(); ) {
String ref = (String) itr.next();
// only add the reference element if it's not empty
if (StringUtils.notEmpty(ref)) {
Element refEl = new Element(PageContentElements.REFERENCE, ContentPreparer.NS);
refEl.appendChild(new Text(StringEscapeUtils.escapeXml(ref)));
refs.appendChild(refEl);
}
}
Element internetInfo = new Element(PageContentElements.INTERNET_INFO, ContentPreparer.NS);
page.appendChild(internetInfo);
internetInfo.appendChild(
new Text(StringEscapeUtils.escapeXml(getMappedPage().getInternetInfo())));
getElement().appendChild(page);
}
public boolean getHasImage2() {
return StringUtils.notEmpty(getImageFilename2());
}