private void importFile(
InputStream in, IRI documentIRI, File inDir, Authorizations authorizations) throws Exception {
byte[] inFileData = IOUtils.toByteArray(in);
Reader inFileReader = new InputStreamReader(new ByteArrayInputStream(inFileData));
OWLOntologyLoaderConfiguration config = new OWLOntologyLoaderConfiguration();
OWLOntologyManager m = createOwlOntologyManager(config, documentIRI);
OWLOntologyDocumentSource documentSource = new ReaderDocumentSource(inFileReader, documentIRI);
OWLOntology o = m.loadOntologyFromOntologyDocument(documentSource, config);
storeOntologyFile(new ByteArrayInputStream(inFileData), documentIRI);
for (OWLClass ontologyClass : o.getClassesInSignature()) {
if (!o.isDeclared(ontologyClass, false)) {
continue;
}
importOntologyClass(o, ontologyClass, inDir, authorizations);
}
for (OWLDataProperty dataTypeProperty : o.getDataPropertiesInSignature()) {
if (!o.isDeclared(dataTypeProperty, false)) {
continue;
}
importDataProperty(o, dataTypeProperty);
}
for (OWLObjectProperty objectProperty : o.getObjectPropertiesInSignature()) {
if (!o.isDeclared(objectProperty, false)) {
continue;
}
importObjectProperty(o, objectProperty);
}
for (OWLObjectProperty objectProperty : o.getObjectPropertiesInSignature()) {
if (!o.isDeclared(objectProperty, false)) {
continue;
}
importInverseOf(o, objectProperty);
}
}
@Override
protected final OWLOntology createOntology() {
OWLOntology ont = getOWLOntology("Ont");
axioms.clear();
axioms.addAll(createAxioms());
getManager().addAxioms(ont, axioms);
for (OWLEntity entity : ont.getSignature()) {
if (!entity.isBuiltIn()) {
if (!ont.isDeclared(entity, true)) {
getManager().addAxiom(ont, getFactory().getOWLDeclarationAxiom(entity));
}
}
}
return ont;
}