Пример #1
0
  /**
   * Parse an ontology from a given URI.
   *
   * @param handler an <code>OWLRDFErrorHandler</code> value
   * @param uri an <code>URI</code> value
   * @return an <code>OWLOntology</code> value
   * @exception ParserException if an error occurs
   * @exception OWLException if an error occurs
   */
  private OWLOntology parseFromURI(OWLRDFErrorHandler handler, URI uri)
      throws ParserException, OWLException {
    parser.setConnection(connection);

    /* Error handler for the parser */
    parser.setOWLRDFErrorHandler(handler);

    // OWLOntology onto = connection.createOWLOntology( uri,uri );
    OWLOntology onto = parser.parseOntology(uri);
    // message( onto.toString() );
    return onto;
  }
Пример #2
0
  /** Create a new validator. Will report to stdout by default. */
  public SwoopSpeciesValidator(SwoopModel model) throws OWLException {
    myModel = model;
    /* Sets up a default reporter that writes to stdout. */
    setReporter(
        new SpeciesValidatorReporter() {
          public void ontology(OWLOntology onto) {
            // System.out.println( onto.getURI() );
          }

          public void done(String str) {
            // System.out.println( str );
          }

          public void message(String str) {
            System.out.println(str);
          }

          public void explain(int l, int code, String str) {
            System.out.println(level(l) + " [" + readableCode(code) + "]:\t" + str);
            // System.out.println( level( l ) + ":\t" + str );
          }
        });
    reservedVocabulary = OWLVocabularyAdapter.INSTANCE.getReservedVocabulary();

    classOnlyVocabulary = new HashSet();
    classOnlyVocabulary.add(OWLVocabularyAdapter.INSTANCE.getStatement());
    classOnlyVocabulary.add(OWLVocabularyAdapter.INSTANCE.getSeq());
    classOnlyVocabulary.add(OWLVocabularyAdapter.INSTANCE.getBag());
    classOnlyVocabulary.add(OWLVocabularyAdapter.INSTANCE.getAlt());

    options = new HashMap();

    /* Get a default connection */
    connection = OWLManager.getOWLConnection();

    parser = new OWLRDFParser();
    /*
     * Tell the parser to ignore annotation content. This is not needed for
     * validation.
     */
    Map options = new HashMap();
    options.put("includeAnnotationContent", new Boolean(false));
    parser.setOptions(options);
  }