/** @throws java.lang.Exception */
@Before
public void setUp() throws Exception {
testHelper.setUp();
testHelper.setTestUser(TEST_USER1);
project = new Project();
project.setName("proj");
project = testHelper.createEntity(project, null);
dataset = new Study();
dataset.setName("study");
dataset.setParentId(project.getId());
dataset = testHelper.createEntity(dataset, null);
// Add a public read ACL to the project object
AccessControlList projectAcl = testHelper.getEntityACL(project);
ResourceAccess ac = new ResourceAccess();
UserGroup authenticatedUsers =
userGroupDAO.findGroup(
AuthorizationConstants.DEFAULT_GROUPS.AUTHENTICATED_USERS.name(), false);
assertNotNull(authenticatedUsers);
ac.setPrincipalId(Long.parseLong(authenticatedUsers.getId()));
ac.setAccessType(new HashSet<ACCESS_TYPE>());
ac.getAccessType().add(ACCESS_TYPE.READ);
projectAcl.getResourceAccess().add(ac);
projectAcl = testHelper.updateEntityAcl(project, projectAcl);
testUser = userGroupDAO.findGroup(TEST_USER1, true);
}
@Test
public void testcreateS3AttachmentToken()
throws JSONObjectAdapterException, ServletException, IOException, DatastoreException {
S3AttachmentToken startToken = new S3AttachmentToken();
startToken.setFileName("someImage.jpg");
startToken.setMd5(TEST_MD5);
String fileName = "images/notAnImage.txt";
URL toUpUrl = S3TokenControllerTest.class.getClassLoader().getResource(fileName);
assertNotNull("Failed to find: " + fileName + " on the classpath", toUpUrl);
File toUpload = new File(toUpUrl.getFile());
// Create the token
S3AttachmentToken resultToken =
testHelper.createS3AttachmentToken(
TestUserDAO.TEST_USER_NAME,
ServiceConstants.AttachmentType.ENTITY,
project.getId(),
startToken);
System.out.println(resultToken);
assertNotNull(resultToken);
assertNotNull(resultToken.getTokenId());
assertNotNull(resultToken.getPresignedUrl());
// Upload it
String path =
S3TokenManagerImpl.createAttachmentPathNoSlash(project.getId(), resultToken.getTokenId());
s3Utility.uploadToS3(toUpload, path);
// Make sure we can get a signed download URL for this attachment.
long now = System.currentTimeMillis();
long oneMinuteFromNow = now + (60 * 1000);
PresignedUrl url =
testHelper.getAttachmentUrl(
TestUserDAO.TEST_USER_NAME, project.getId(), resultToken.getTokenId());
System.out.println(url);
assertNotNull(url);
assertNotNull(url.getPresignedUrl());
URL urlReal = new URL(url.getPresignedUrl());
// Check that it expires quickly.
String[] split = urlReal.getQuery().split("&");
assertTrue(split.length > 1);
String[] expiresSplit = split[0].split("=");
assertEquals("Expires", expiresSplit[0]);
// It should expire within a minute max
Long expirsInt = Long.parseLong(expiresSplit[1]);
long expiresMil = expirsInt.longValue() * 1000l;
System.out.println("Now: " + new Date(now));
System.out.println("Expires: " + new Date(expiresMil));
assertTrue("This URL should expire in under a minute!", expiresMil < oneMinuteFromNow);
assertTrue("This URL should expire after now!", now <= expiresMil);
// Delete the file
s3Utility.deleteFromS3(path);
}
/** @throws Exception */
@Test
public void testCreateS3TokenRelativePath() throws Exception {
Code code = new Code();
code.setParentId(project.getId());
code = testHelper.createEntity(code, null);
// a relative path to a file
String initialPath = "foo.java";
S3Token token = new S3Token();
token.setPath(initialPath);
token.setMd5(TEST_MD5);
token = testHelper.createObject(code.getS3Token(), token);
assertEquals(StackConfiguration.getS3Bucket(), token.getBucket());
assertTrue(
token
.getPath()
.matches("^/" + KeyFactory.stringToKey(code.getId()) + "/\\d+/" + initialPath + "$"));
assertEquals(TEST_MD5, token.getMd5());
assertEquals("text/plain", token.getContentType());
assertNotNull(token.getSecretAccessKey());
assertNotNull(token.getAccessKeyId());
assertNotNull(token.getSessionToken());
assertTrue(token.getPresignedUrl().matches("^http.*" + initialPath + ".*"));
}
@Test(expected = IllegalArgumentException.class)
public void testProjectWithDatasetParent()
throws InvalidModelException, NotFoundException, DatastoreException, UnauthorizedException {
String parentId = "123";
// This is our parent header
EntityHeader parentHeader = new EntityHeader();
parentHeader.setId(parentId);
parentHeader.setName("name");
parentHeader.setType(EntityType.dataset.getEntityType());
List<EntityHeader> path = new ArrayList<EntityHeader>();
path.add(parentHeader);
Project project = new Project();
project.setParentId(parentId);
// This should not be valid
allTypesValidator.validateEntity(project, new EntityEvent(EventType.CREATE, path, null));
}
@Test
public void testPLFM_1288() throws Exception {
Project p = new Project();
p.setName("Create without entity type");
p.setEntityType(p.getClass().getName());
p = (Project) entityServletHelper.createEntity(p, TEST_USER1);
toDelete.add(p.getId());
Study one = new Study();
one.setName("one");
one.setParentId(p.getId());
one.setEntityType(Study.class.getName());
one = (Study) entityServletHelper.createEntity(one, TEST_USER1);
// Now try to re-use the name
Code two = new Code();
two.setName("code");
two.setParentId(one.getId());
two.setEntityType(Code.class.getName());
try {
two = (Code) entityServletHelper.createEntity(two, TEST_USER1);
fail("Code cannot have a parent of type Study");
} catch (IllegalArgumentException e) {
System.out.println(e.getMessage());
assertTrue(e.getMessage().indexOf(Code.class.getName()) > 0);
assertTrue(e.getMessage().indexOf(Study.class.getName()) > 0);
}
}
@Test
public void testGetUserEntityPermissions()
throws JSONObjectAdapterException, ServletException, IOException, NotFoundException,
DatastoreException {
Project p = new Project();
p.setName("UserEntityPermissions");
p.setEntityType(p.getClass().getName());
Project clone = (Project) entityServletHelper.createEntity(p, TEST_USER1);
String id = clone.getId();
toDelete.add(id);
UserEntityPermissions uep = entityServletHelper.getUserEntityPermissions(id, TEST_USER1);
assertNotNull(uep);
assertTrue(uep.getCanEdit());
}
@Test(expected = NameConflictException.class)
public void testPLFM_449NameConflict() throws Exception {
Project p = new Project();
p.setName("Create without entity type");
p.setEntityType(p.getClass().getName());
p = (Project) entityServletHelper.createEntity(p, TEST_USER1);
toDelete.add(p.getId());
Study one = new Study();
one.setName("one");
one.setParentId(p.getId());
one.setEntityType(Study.class.getName());
one = (Study) entityServletHelper.createEntity(one, TEST_USER1);
// Now try to re-use the name
Study two = new Study();
two.setName("one");
two.setParentId(p.getId());
two.setEntityType(Study.class.getName());
two = (Study) entityServletHelper.createEntity(two, TEST_USER1);
}
@Test
public void testEntityPath()
throws JSONObjectAdapterException, ServletException, IOException, NotFoundException,
DatastoreException {
Project p = new Project();
p.setName("EntityPath");
p.setEntityType(p.getClass().getName());
Project clone = (Project) entityServletHelper.createEntity(p, TEST_USER1);
String id = clone.getId();
toDelete.add(id);
EntityPath path = entityServletHelper.getEntityPath(id, TEST_USER1);
assertNotNull(path);
assertNotNull(path.getPath());
assertEquals(2, path.getPath().size());
EntityHeader header = path.getPath().get(1);
assertNotNull(header);
assertEquals(id, header.getId());
}
@Test
public void testEntityTypeBatch() throws Exception {
List<String> ids = new ArrayList<String>();
for (int i = 0; i < 12; i++) {
Project p = new Project();
p.setName("EntityTypeBatchItem" + i);
p.setEntityType(p.getClass().getName());
Project clone = (Project) entityServletHelper.createEntity(p, TEST_USER1);
String id = clone.getId();
toDelete.add(id);
ids.add(id);
}
BatchResults<EntityHeader> results = entityServletHelper.getEntityTypeBatch(ids, TEST_USER1);
assertNotNull(results);
assertEquals(12, results.getTotalNumberOfResults());
List<String> outputIds = new ArrayList<String>();
for (EntityHeader header : results.getResults()) {
outputIds.add(header.getId());
}
assertEquals(ids.size(), outputIds.size());
assertTrue(ids.containsAll(outputIds));
}
@Test
public void testAnnotationsCRUD() throws Exception {
Project p = new Project();
p.setName("AnnotCrud");
p.setEntityType(p.getClass().getName());
Project clone = (Project) entityServletHelper.createEntity(p, TEST_USER1);
String id = clone.getId();
toDelete.add(id);
// Get the annotaions for this entity
Annotations annos = entityServletHelper.getEntityAnnotaions(id, TEST_USER1);
assertNotNull(annos);
// Change the values
annos.addAnnotation("doubleAnno", new Double(45.0001));
annos.addAnnotation("string", "A string");
// Updte them
Annotations annosClone = entityServletHelper.updateAnnotations(annos, TEST_USER1);
assertNotNull(annosClone);
assertEquals(id, annosClone.getId());
assertFalse(annos.getEtag().equals(annosClone.getEtag()));
String value = (String) annosClone.getSingleValue("string");
assertEquals("A string", value);
assertEquals(new Double(45.0001), annosClone.getSingleValue("doubleAnno"));
}
@Test
public void testCRUDEntity() throws Exception {
Project p = new Project();
p.setName("Create without entity type");
p.setEntityType(p.getClass().getName());
Project clone = (Project) entityServletHelper.createEntity(p, TEST_USER1);
String id = clone.getId();
toDelete.add(id);
assertEquals(p.getName(), clone.getName());
// Now get the entity with the ID
Project clone2 = (Project) entityServletHelper.getEntity(id, TEST_USER1);
assertEquals(clone, clone2);
// Make sure we can update it
clone2.setName("My new name");
Project clone3 = (Project) entityServletHelper.updateEntity(clone2, TEST_USER1);
assertNotNull(clone3);
assertEquals(clone2.getName(), clone3.getName());
// Should not match the original
assertFalse(p.getName().equals(clone3.getName()));
// the Etag should have changed
assertFalse(clone2.getEtag().equals(clone3.getEtag()));
// Now delete it
entityServletHelper.deleteEntity(id, TEST_USER1);
// it should not be found now
try {
entityServletHelper.getEntity(id, TEST_USER1);
fail("Delete failed");
} catch (NotFoundException e) {
// expected
}
}