@After
public void tearDown() throws Exception {
if (accessApproval != null && accessApproval.getId() != null) {
accessApprovalDAO.delete(accessApproval.getId().toString());
}
if (accessApproval2 != null && accessApproval2.getId() != null) {
accessApprovalDAO.delete(accessApproval2.getId().toString());
}
if (accessRequirement != null && accessRequirement.getId() != null) {
accessRequirementDAO.delete(accessRequirement.getId().toString());
}
if (accessRequirement2 != null && accessRequirement2.getId() != null) {
accessRequirementDAO.delete(accessRequirement2.getId().toString());
}
if (node != null && nodeDAO != null) {
nodeDAO.delete(node.getId());
node = null;
}
if (node2 != null && nodeDAO != null) {
nodeDAO.delete(node2.getId());
node2 = null;
}
if (evaluation != null && evaluationDAO != null) {
evaluationDAO.delete(evaluation.getId());
evaluation = null;
}
individualGroup = userGroupDAO.findGroup(TEST_USER_NAME, true);
if (individualGroup != null) {
userGroupDAO.delete(individualGroup.getId());
}
individualGroup2 = userGroupDAO.findGroup(TEST_USER_NAME_2, true);
if (individualGroup2 != null) {
userGroupDAO.delete(individualGroup2.getId());
}
}
public static TermsOfUseAccessRequirement newAccessRequirement(UserGroup principal, Node node)
throws DatastoreException {
TermsOfUseAccessRequirement accessRequirement = new TermsOfUseAccessRequirement();
accessRequirement.setCreatedBy(principal.getId());
accessRequirement.setCreatedOn(new Date());
accessRequirement.setModifiedBy(principal.getId());
accessRequirement.setModifiedOn(new Date());
accessRequirement.setEtag("10");
accessRequirement.setAccessType(ACCESS_TYPE.DOWNLOAD);
accessRequirement.setEntityIds(
Arrays.asList(
new String[] {
node.getId(), node.getId()
})); // test that repeated IDs doesn't break anything
accessRequirement.setEntityType("com.sagebionetworks.repo.model.TermsOfUseAccessRequirements");
return accessRequirement;
}
@Before
public void setUp() throws Exception {
individualGroup = userGroupDAO.findGroup(TEST_USER_NAME, true);
if (individualGroup == null) {
individualGroup = new UserGroup();
individualGroup.setName(TEST_USER_NAME);
individualGroup.setIsIndividual(true);
individualGroup.setCreationDate(new Date());
individualGroup.setId(userGroupDAO.create(individualGroup));
}
if (node == null) {
node = NodeTestUtils.createNew("foo", Long.parseLong(individualGroup.getId()));
node.setId(nodeDAO.createNew(node));
}
;
if (node2 == null) {
node2 = NodeTestUtils.createNew("bar", Long.parseLong(individualGroup.getId()));
node2.setId(nodeDAO.createNew(node2));
}
;
}
@Before
public void setUp() throws DatastoreException, InvalidModelException, NotFoundException {
// create a node
Node toCreate = NodeTestUtils.createNew(name, userId);
toCreate.setVersionComment("This is the first version of the first node ever!");
toCreate.setVersionLabel("0.0.1");
nodeId = nodeDAO.createNew(toCreate).substring(3); // trim "syn" from node ID
// Initialize a new Evaluation
EvaluationDBO evaluation = new EvaluationDBO();
evaluation.setId(evalId);
evaluation.seteTag("etag");
evaluation.setName("name");
evaluation.setOwnerId(userId);
evaluation.setContentSource(KeyFactory.ROOT_ID);
evaluation.setCreatedOn(System.currentTimeMillis());
evaluation.setStatusEnum(EvaluationStatus.PLANNED);
evalId = dboBasicDao.createNew(evaluation).getId();
// Initialize a new Participant
ParticipantDBO participant = new ParticipantDBO();
participant.setUserId(userId);
participant.setEvalId(evalId);
participant.setCreatedOn(System.currentTimeMillis());
participant.setId(idGenerator.generateNewId(TYPE.PARTICIPANT_ID));
dboBasicDao.createNew(participant);
// Initialize a new Submission
SubmissionDBO submission = new SubmissionDBO();
submission.setId(submissionId);
submission.setName(name);
submission.setEntityId(Long.parseLong(nodeId));
submission.setVersionNumber(1L);
submission.setUserId(userId);
submission.setEvalId(evalId);
submission.setCreatedOn(System.currentTimeMillis());
dboBasicDao.createNew(submission);
}
@Test
public void testCRUD() throws Exception {
// Create a new object
accessRequirement = newAccessRequirement(individualGroup, node);
// PLFM-1477, we have to check that retrieval works when there is another access requirement
accessRequirement2 = newAccessRequirement(individualGroup, node2);
long initialCount = accessRequirementDAO.getCount();
// Create it
TermsOfUseAccessRequirement accessRequirementCopy =
accessRequirementDAO.create(accessRequirement);
accessRequirement = accessRequirementCopy;
assertNotNull(accessRequirementCopy.getId());
assertEquals(1 + initialCount, accessRequirementDAO.getCount());
// Fetch it
// PLFM-1477, we have to check that retrieval works when there is another access requirement
accessRequirement2 = accessRequirementDAO.create(accessRequirement2);
AccessRequirement clone = accessRequirementDAO.get(accessRequirement.getId().toString());
assertNotNull(clone);
assertEquals(accessRequirement, clone);
// Get by Node Id
Collection<AccessRequirement> ars = accessRequirementDAO.getForNode(node.getId());
assertEquals(1, ars.size());
assertEquals(accessRequirement, ars.iterator().next());
// update it
clone = ars.iterator().next();
clone.setAccessType(ACCESS_TYPE.READ);
AccessRequirement updatedAR = accessRequirementDAO.update(clone);
assertEquals(clone.getAccessType(), updatedAR.getAccessType());
assertTrue(
"etags should be different after an update", !clone.getEtag().equals(updatedAR.getEtag()));
try {
((TermsOfUseAccessRequirement) clone).setTermsOfUse("bar");
accessRequirementDAO.update(clone);
fail("conflicting update exception not thrown");
} catch (ConflictingUpdateException e) {
// We expected this exception
}
try {
// Update from a backup.
updatedAR = accessRequirementDAO.updateFromBackup(clone);
assertEquals(clone.getEtag(), updatedAR.getEtag());
} catch (ConflictingUpdateException e) {
fail("Update from backup should not generate exception even if the e-tag is different.");
}
QueryResults<MigratableObjectData> migrationData =
accessRequirementDAO.getMigrationObjectData(0, 10000, true);
List<MigratableObjectData> results = migrationData.getResults();
assertEquals(1 + 1 + initialCount, results.size()); // "+1" for extra AR added to test PLFM-1477
assertEquals(migrationData.getTotalNumberOfResults(), results.size());
boolean foundAr = false;
for (MigratableObjectData od : results) {
MigratableObjectDescriptor obj = od.getId();
assertNotNull(obj.getId());
assertNotNull(od.getEtag());
assertEquals(MigratableObjectType.ACCESSREQUIREMENT, obj.getType());
assertNotNull(od.getDependencies());
if (obj.getId().equals(clone.getId().toString())) {
foundAr = true;
Collection<MigratableObjectDescriptor> deps = od.getDependencies();
assertTrue(deps.size() > 0); // is dependent on 'node'
boolean foundNode = false;
for (MigratableObjectDescriptor d : deps) {
if (d.getId().equals(node.getId())) {
foundNode = true;
}
assertEquals(MigratableObjectType.ENTITY, d.getType());
}
assertTrue("dependencies: " + deps, foundNode);
}
}
assertTrue(foundAr);
// Delete it
accessRequirementDAO.delete(accessRequirement.getId().toString());
accessRequirementDAO.delete(accessRequirement2.getId().toString());
assertEquals(initialCount, accessRequirementDAO.getCount());
}
@Before
public void setUp() throws Exception {
individualGroup = userGroupDAO.findGroup(TEST_USER_NAME, true);
if (individualGroup == null) {
individualGroup = new UserGroup();
individualGroup.setName(TEST_USER_NAME);
individualGroup.setIsIndividual(true);
individualGroup.setCreationDate(new Date());
individualGroup.setId(userGroupDAO.create(individualGroup));
}
individualGroup2 = userGroupDAO.findGroup(TEST_USER_NAME, true);
if (individualGroup2 == null) {
individualGroup2 = new UserGroup();
individualGroup2.setName(TEST_USER_NAME_2);
individualGroup2.setIsIndividual(true);
individualGroup2.setCreationDate(new Date());
individualGroup2.setId(userGroupDAO.create(individualGroup2));
}
if (node == null) {
node = NodeTestUtils.createNew("foo", Long.parseLong(individualGroup.getId()));
node.setId(nodeDAO.createNew(node));
}
;
if (node2 == null) {
node2 = NodeTestUtils.createNew("bar", Long.parseLong(individualGroup.getId()));
node2.setId(nodeDAO.createNew(node2));
}
;
accessRequirement =
DBOAccessRequirementDAOImplTest.newEntityAccessRequirement(individualGroup, node, "foo");
accessRequirement = accessRequirementDAO.create(accessRequirement);
Long id = accessRequirement.getId();
assertNotNull(id);
if (evaluation == null) {
evaluation =
DBOAccessRequirementDAOImplTest.createNewEvaluation(
"foo", individualGroup.getId(), idGenerator, node.getId());
evaluation.setId(evaluationDAO.create(evaluation, Long.parseLong(individualGroup.getId())));
}
;
accessRequirement2 =
DBOAccessRequirementDAOImplTest.newMixedAccessRequirement(
individualGroup, node2, evaluation, "bar");
accessRequirement2 = accessRequirementDAO.create(accessRequirement2);
id = accessRequirement2.getId();
assertNotNull(id);
if (participateAndDownload == null) {
participateAndDownload = new ArrayList<ACCESS_TYPE>();
participateAndDownload.add(ACCESS_TYPE.DOWNLOAD);
participateAndDownload.add(ACCESS_TYPE.PARTICIPATE);
}
if (downloadAccessType == null) {
downloadAccessType = new ArrayList<ACCESS_TYPE>();
downloadAccessType.add(ACCESS_TYPE.DOWNLOAD);
}
if (updateAccessType == null) {
updateAccessType = new ArrayList<ACCESS_TYPE>();
updateAccessType.add(ACCESS_TYPE.UPDATE);
}
}
@Test
public void testCRUD() throws Exception {
// first of all, we should see the unmet requirement
RestrictableObjectDescriptor rod =
AccessRequirementUtilsTest.createRestrictableObjectDescriptor(node.getId());
List<Long> unmetARIds =
accessRequirementDAO.unmetAccessRequirements(
rod,
Arrays.asList(new Long[] {Long.parseLong(individualGroup.getId())}),
downloadAccessType);
assertEquals(1, unmetARIds.size());
assertEquals(accessRequirement.getId(), unmetARIds.iterator().next());
// while we're at it, check the edge cases:
// same result for ficticious principal ID
unmetARIds =
accessRequirementDAO.unmetAccessRequirements(
rod, Arrays.asList(new Long[] {8888L}), downloadAccessType);
assertEquals(1, unmetARIds.size());
assertEquals(accessRequirement.getId(), unmetARIds.iterator().next());
// no unmet requirements for ficticious node ID
assertTrue(
accessRequirementDAO
.unmetAccessRequirements(
AccessRequirementUtilsTest.createRestrictableObjectDescriptor("syn7890"),
Arrays.asList(new Long[] {Long.parseLong(individualGroup.getId())}),
downloadAccessType)
.isEmpty());
// no unmet requirement for other type of access
assertTrue(
accessRequirementDAO
.unmetAccessRequirements(
rod,
Arrays.asList(new Long[] {Long.parseLong(individualGroup.getId())}),
updateAccessType)
.isEmpty());
// Create a new object
accessApproval = newAccessApproval(individualGroup, accessRequirement);
// Create it
accessApproval = accessApprovalDAO.create(accessApproval);
String id = accessApproval.getId().toString();
assertNotNull(id);
// no unmet requirement anymore ...
assertTrue(
accessRequirementDAO
.unmetAccessRequirements(
rod,
Arrays.asList(new Long[] {Long.parseLong(individualGroup.getId())}),
downloadAccessType)
.isEmpty());
// ... but for a different (ficticious) user, the requirement isn't met...
unmetARIds =
accessRequirementDAO.unmetAccessRequirements(
rod, Arrays.asList(new Long[] {8888L}), downloadAccessType);
assertEquals(1, unmetARIds.size());
assertEquals(accessRequirement.getId(), unmetARIds.iterator().next());
// ... and it's still unmet for the second node
RestrictableObjectDescriptor rod2 =
AccessRequirementUtilsTest.createRestrictableObjectDescriptor(node2.getId());
unmetARIds =
accessRequirementDAO.unmetAccessRequirements(
rod2,
Arrays.asList(new Long[] {Long.parseLong(individualGroup.getId())}),
participateAndDownload);
assertEquals(1, unmetARIds.size());
assertEquals(accessRequirement2.getId(), unmetARIds.iterator().next());
// Fetch it
AccessApproval clone = accessApprovalDAO.get(id);
assertNotNull(clone);
assertEquals(accessApproval, clone);
// Get by Node Id
Collection<AccessApproval> ars =
accessApprovalDAO.getForAccessRequirementsAndPrincipals(
Arrays.asList(new String[] {accessRequirement.getId().toString()}),
Arrays.asList(new String[] {individualGroup.getId().toString()}));
assertEquals(1, ars.size());
assertEquals(accessApproval, ars.iterator().next());
// update it
clone = ars.iterator().next();
AccessApproval updatedAA = accessApprovalDAO.update(clone);
assertEquals(
((TermsOfUseAccessApproval) clone).getEntityType(),
((TermsOfUseAccessApproval) updatedAA).getEntityType());
assertTrue(
"etags should be different after an update", !clone.getEtag().equals(updatedAA.getEtag()));
try {
accessApprovalDAO.update(clone);
fail("conflicting update exception not thrown");
} catch (ConflictingUpdateException e) {
// We expected this exception
}
try {
// Update from a backup.
updatedAA = accessApprovalDAO.updateFromBackup(clone);
assertEquals(clone.getEtag(), updatedAA.getEtag());
} catch (ConflictingUpdateException e) {
fail("Update from backup should not generate exception even if the e-tag is different.");
}
// Delete it
accessApprovalDAO.delete(id);
}