/**
* Format of a proper get request: <uid>(assessmentUID)</uid>
*
* <p>or
*
* <p><taxon>(taxonID)</taxon>
*
* <p>If the type parameter is null for the latter format, all .
*
* @param getEntity
* @param type
* @return
*/
private String getAssessments(Request request, String user) throws IOException {
String type = (String) request.getAttributes().get("type");
Document doc = new DomRepresentation(request.getEntity()).getDocument();
StringBuilder ret = new StringBuilder("<assessments>");
NodeCollection uidNodes = new NodeCollection(doc.getElementsByTagName("uid"));
if (uidNodes.size() > 0) {
Map<String, List<String>> typeToIDs = new HashMap<String, List<String>>();
for (Node curNode : uidNodes) {
String uid = curNode.getTextContent();
int splitIndex = uid.lastIndexOf("_", uid.lastIndexOf("_") - 1);
if (splitIndex > 0) {
String curType = uid.substring(splitIndex + 1);
List<String> typeList = typeToIDs.get(curType);
if (typeList == null) {
typeList = new ArrayList<String>();
typeToIDs.put(uid.substring(splitIndex + 1), typeList);
}
typeList.add(uid.substring(0, splitIndex));
} else {
System.out.println("Split index for UID " + uid + " is obviously s***e.");
}
}
for (Entry<String, List<String>> curEntry : typeToIDs.entrySet())
for (String curID : curEntry.getValue())
ret.append(AssessmentIO.readAssessmentAsString(vfs, curID, curEntry.getKey(), user));
}
NodeCollection taxaNodes = new NodeCollection(doc.getElementsByTagName("taxon"));
if (taxaNodes.size() > 0) {
for (Node curNode : taxaNodes) {
String taxonID = curNode.getTextContent();
if (type == null)
for (String cur : AssessmentIO.readAllAssessmentsForTaxonAsStrings(vfs, taxonID, user))
ret.append(cur);
else if (type.equals(BaseAssessment.DRAFT_ASSESSMENT_STATUS))
for (String cur : AssessmentIO.readAllDraftAssessmentsAsStrings(vfs, taxonID))
ret.append(cur);
else if (type.equals(BaseAssessment.PUBLISHED_ASSESSMENT_STATUS))
for (String cur : AssessmentIO.readPublishedAssessmentsForTaxonAsStrings(vfs, taxonID))
ret.append(cur);
}
}
ret.append("</assessments>");
return ret.toString();
}
private void putAssessment(Request request, Response response, String username) {
try {
NativeDocument doc = NativeDocumentFactory.newNativeDocument();
doc.parse(request.getEntity().getText());
AssessmentParser parser = new AssessmentParser(doc);
AssessmentData assessment = parser.getAssessment();
AssessmentIOWriteResult result = assignIDAndSave(assessment, username);
if (result.status.isSuccess()) {
response.setEntity(assessment.getAssessmentID(), MediaType.TEXT_PLAIN);
response.setStatus(Status.SUCCESS_OK);
} else {
response.setStatus(Status.CLIENT_ERROR_EXPECTATION_FAILED);
}
} catch (RegionConflictException e) {
response.setStatus(Status.CLIENT_ERROR_CONFLICT);
} catch (Exception e) {
response.setStatus(Status.SERVER_ERROR_INTERNAL);
}
}
private void postAssessment(Request request, Response response, String username) {
try {
String entity = request.getEntity().getText();
NativeDocument doc = NativeDocumentFactory.newNativeDocument();
doc.parse(entity);
AssessmentParser parser = new AssessmentParser(doc);
AssessmentData assessment = parser.getAssessment();
VFSPath assessmentUrl = new VFSPath(ServerPaths.getPathForAssessment(assessment, username));
if (vfs.exists(assessmentUrl)) {
Status status =
FileLocker.impl.persistentLockAssessment(
assessment.getAssessmentID(),
BaseAssessment.DRAFT_ASSESSMENT_STATUS,
LockType.SAVE_LOCK,
username);
if (status.isSuccess()) {
AssessmentIOWriteResult result = saveAssessment(assessment, username);
if (result.status.isSuccess()) {
response.setEntity(result.newLastModified + "", MediaType.TEXT_PLAIN);
response.setStatus(status);
} else {
response.setStatus(Status.CLIENT_ERROR_EXPECTATION_FAILED);
}
} else {
response.setStatus(status);
}
}
} catch (RegionConflictException e) {
response.setStatus(Status.CLIENT_ERROR_CONFLICT);
} catch (Exception e) {
e.printStackTrace();
response.setStatus(Status.CLIENT_ERROR_BAD_REQUEST);
}
}
/**
* Method responsible for handling incoming POSTs. It will parse the XML document and deserialize
* it into a SeedRequest, then create a SeedTask and forward it to the thread pool executor.
*/
public void doPost(Request req, Response resp) throws RestletException, IOException {
String formatExtension = (String) req.getAttributes().get("extension");
SeedRequest sr = null;
XStream xs = xmlConfig.getConfiguredXStream(new XStream(new DomDriver()));
try {
if (formatExtension.equalsIgnoreCase("xml")) {
String xml_body = req.getEntity().getText();
log.debug("doPost, xml = " + xml_body);
DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
DocumentBuilder db = dbf.newDocumentBuilder();
ByteArrayInputStream xml_bs = new ByteArrayInputStream(xml_body.getBytes());
Document doc = db.parse(xml_bs);
Node rootNode = doc.getFirstChild();
xs.alias("seedRequest", SeedRequest.class);
sr = (SeedRequest) xs.unmarshal(new DomReader((Element) rootNode));
log.debug("doPost, sr = " + sr.getLayerName());
} else if (formatExtension.equalsIgnoreCase("json")) {
sr = (SeedRequest) xs.fromXML(convertJson(req.getEntity().getText()));
} else {
throw new RestletException(
"Format extension unknown or not specified: " + formatExtension,
Status.CLIENT_ERROR_BAD_REQUEST);
}
} catch (Exception e) {
log.error("Exception type = " + e.getClass().getName() + " msg = " + e.getMessage());
e.printStackTrace();
if (e.getCause() != null) {
log.error("cause = " + e.getCause().getMessage());
}
}
StringBuilder strBld = new StringBuilder();
strBld.append("<?xml version=\"1.0\" encoding=\"utf-8\"?>");
String layerName = null;
try {
layerName = URLDecoder.decode((String) req.getAttributes().get("layer"), "UTF-8");
} catch (UnsupportedEncodingException uee) {
log.error("Exception type = " + uee.getClass().getName() + " msg = " + uee.getMessage());
throw new RestletException(uee.getMessage(), Status.SERVER_ERROR_INTERNAL);
}
log.debug(
"layerName = "
+ layerName
+ " sr.GridSetId = "
+ sr.getGridSetId()
+ " type = "
+ sr.getType());
GWCTask[] tasks = null;
try {
TileLayer tl = null;
try {
tl = seeder.findTileLayer(layerName);
} catch (GeoWebCacheException e) {
strBld.append("<GeoWebCacheException>");
strBld.append(e.getMessage());
strBld.append("</GeoWebCacheException>");
resp.setEntity(strBld.toString(), MediaType.TEXT_XML);
throw new RestletException(e.getMessage(), Status.SERVER_ERROR_INTERNAL);
}
TileRange tr = TileBreeder.createTileRange(sr, tl);
tasks = seeder.createTasks(tr, tl, sr.getType(), sr.getThreadCount(), sr.getFilterUpdate());
seeder.dispatchTasks(tasks);
// Give the thread executor a chance to run
try {
Thread.sleep(500);
} catch (InterruptedException e) {
// Ok, no worries
}
} catch (IllegalArgumentException e) {
log.error("IllegalArgumentException occured: " + e.getMessage());
throw new RestletException(e.getMessage(), Status.CLIENT_ERROR_BAD_REQUEST);
} catch (GeoWebCacheException e) {
log.error("GeoWebCacheException occured: " + e.getMessage());
throw new RestletException(e.getMessage(), Status.SERVER_ERROR_INTERNAL);
}
strBld.append("<Tasks>");
if (tasks.length == 0) {
log.debug("No running tasks");
}
for (int i = 0; i < tasks.length; i++) {
if (i > 0) {
strBld.append(",");
}
strBld.append(tasks[i].getDbId());
}
strBld.append("</Tasks>\n");
log.debug("post response = " + strBld.toString());
resp.setEntity(strBld.toString(), MediaType.TEXT_XML);
}
/**
* Sends the request to the client. Commits the request line, headers and optional entity and send
* them over the network.
*
* @param request The high-level request.
* @return The result status.
*/
@Override
public Status sendRequest(Request request) {
Status result = null;
try {
final Representation entity = request.getEntity();
// Set the request headers
for (final Parameter header : getRequestHeaders()) {
getHttpMethod().addRequestHeader(header.getName(), header.getValue());
}
// For those method that accept enclosing entites, provide it
if ((entity != null) && (getHttpMethod() instanceof EntityEnclosingMethod)) {
final EntityEnclosingMethod eem = (EntityEnclosingMethod) getHttpMethod();
eem.setRequestEntity(
new RequestEntity() {
public long getContentLength() {
return entity.getSize();
}
public String getContentType() {
return (entity.getMediaType() != null) ? entity.getMediaType().toString() : null;
}
public boolean isRepeatable() {
return !entity.isTransient();
}
public void writeRequest(OutputStream os) throws IOException {
entity.write(os);
}
});
}
// Ensure that the connection is active
this.clientHelper.getHttpClient().executeMethod(getHttpMethod());
// Now we can access the status code, this MUST happen after closing
// any open request stream.
result = new Status(getStatusCode(), null, getReasonPhrase(), null);
// If there is no response body, immediately release the connection
if (getHttpMethod().getResponseBodyAsStream() == null) {
getHttpMethod().releaseConnection();
}
} catch (IOException ioe) {
this.clientHelper
.getLogger()
.log(
Level.WARNING,
"An error occurred during the communication with the remote HTTP server.",
ioe);
result = new Status(Status.CONNECTOR_ERROR_COMMUNICATION, ioe);
// Release the connection
getHttpMethod().releaseConnection();
}
return result;
}
private String batchCreate(Request request, String username) {
NativeDocument doc = NativeDocumentFactory.newNativeDocument();
StringBuffer successfulIDs = new StringBuffer();
StringBuffer extantIDs = new StringBuffer();
StringBuffer unsuccessfulIDs = new StringBuffer();
try {
String text = request.getEntity().getText();
doc.parse(text);
AssessmentFilter filter =
AssessmentFilter.parseXML(
doc.getDocumentElement()
.getElementsByTagName(AssessmentFilter.HEAD_TAG)
.elementAt(0));
NativeNodeList nodes = doc.getDocumentElement().getElementsByTagName("taxon");
boolean useTemplate =
Boolean.parseBoolean(
doc.getDocumentElement()
.getElementsByTagName("useTemplate")
.elementAt(0)
.getTextContent());
System.out.println("Using template? " + useTemplate);
for (int i = 0; i < nodes.getLength(); i++) {
TaxonNode taxon = TaxaIO.readNode(nodes.elementAt(i).getTextContent(), vfs);
AssessmentData curAss = null;
curAss =
doCreateAssessmentForBatch(
request.getChallengeResponse().getIdentifier(), filter, useTemplate, taxon);
try {
AssessmentIOWriteResult result = assignIDAndSave(curAss, username);
if (result.status.isSuccess())
successfulIDs.append(
curAss.getSpeciesName() + (i == nodes.getLength() - 1 ? "" : ", "));
else
unsuccessfulIDs.append(
curAss.getSpeciesName() + (i == nodes.getLength() - 1 ? "" : ", "));
} catch (RegionConflictException e) {
extantIDs.append(curAss.getSpeciesName() + (i == nodes.getLength() - 1 ? "" : ", "));
}
}
StringBuilder ret = new StringBuilder();
if (unsuccessfulIDs.length() > 0)
ret.append(
"<div>Unable to create an assessment for the following species: "
+ unsuccessfulIDs
+ "</div>\r\n");
if (extantIDs.length() > 0)
ret.append(
"<div>The following species already have draft assessments with the specific locality: "
+ extantIDs
+ "</div>\r\n");
if (successfulIDs.length() > 0)
ret.append(
"<div>Successfully created an assessment for the following species: "
+ successfulIDs
+ "</div>\r\n");
return ret.toString();
} catch (IOException e) {
e.printStackTrace();
return null;
} catch (NullPointerException e) {
e.printStackTrace();
return null;
} catch (Exception e) {
e.printStackTrace();
return null;
}
}