/**
* gets patients pediatrics who have adult who stage
*
* @param session
* @return patientsPediatricsWhoHaveAdultWhoStage
*/
public List<Patient> getPatientsPediatricsWhoHaveAdultWhoStage() {
List<Patient> patientsInHIVProgram = new ArrayList<Patient>();
List<Patient> patientsPediatricsInHIVProgram = new ArrayList<Patient>();
List<Patient> patientsPediatricsWhoHaveAdultWhoStage = new ArrayList<Patient>();
List<Patient> patientsWhoHaveAdultWhoStage = new ArrayList<Patient>();
// List<Person> persons = new ArrayList<Person>();
// List<Obs> observers = new ArrayList<Obs>();
ProgramWorkflowService programService = Context.getProgramWorkflowService();
Program program = programService.getProgram(2);
patientsInHIVProgram = getPatientsCurrentlyInHIVProgram(program);
for (Patient patient : patientsInHIVProgram) {
if (patient.getAge() < 15) {
patientsPediatricsInHIVProgram.add(patient);
}
}
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Integer> patientIds = dqs.getPatientsWhoHaveAdultWhoStage();
for (Integer patientId : patientIds) {
patientsWhoHaveAdultWhoStage.add(getPatientById(patientId));
}
for (Patient patient : patientsWhoHaveAdultWhoStage) {
if (patientsPediatricsInHIVProgram.contains(patient)) {
patientsPediatricsWhoHaveAdultWhoStage.add(patient);
}
}
return patientsPediatricsWhoHaveAdultWhoStage;
}
/**
* gets patients with no programs enrollment dates
*
* @return
*/
public List<Patient> getPatientsWithNoProgramsEnrollmentDates() {
List<Patient> patientsWithNoProgramsEnrollmentDates = new ArrayList<Patient>();
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Integer> patientIds = dqs.getPatientsWithNoProgramsEnrollmentDates();
for (Integer patientId : patientIds) {
patientsWithNoProgramsEnrollmentDates.add(getPatientById(patientId));
}
return patientsWithNoProgramsEnrollmentDates;
}
/**
* gets patients without start date
*
* @return
*/
public List<Patient> getPatientsWithoutStartDate() {
List<Patient> patientsWithoutStartDate = new ArrayList<Patient>();
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Integer> patientIds = dqs.getPatientsWithoutStartDate();
for (Integer patientId : patientIds) {
patientsWithoutStartDate.add(getPatientById(patientId));
}
return patientsWithoutStartDate;
}
/**
* gets patients without a given identifier type TODO use: select patient.patient_id from patient
* left join patient_identifier on patient.patient_id = patient_identifier.patient_id where
* patient_identifier.patient_id is null;
*
* @param PatientIdentifierId
* @return patients
*/
public List<Patient> getPatientWithNoGivenIdentifier(int identifierTypeId) {
PatientService patientService = Context.getPatientService();
ArrayList<Patient> patientList = new ArrayList<Patient>();
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Integer> patientIds = dqs.getPatientsWithoutIdentifiers(identifierTypeId);
for (Integer patientId : patientIds) {
patientList.add(patientService.getPatient(patientId));
}
return patientList;
}
/**
* gets patients without a given Concept
*
* @param concept
* @return allpatients
*/
public List<Patient> getPatientWithoutAdmitionModeConcept(Concept concept) {
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Patient> patients = new ArrayList<Patient>();
List<Patient> patientList = dqs.getPatientsWithoutAnObsAdmissionMode(concept);
for (Patient patient : patientList) {
if (!(patient.isUser())) {
patients.add(patient);
}
}
return patients;
}
/**
* gets patients Without any Program
*
* @param session
* @return patients
*/
public List<Patient> getPatientWithoutProgram() {
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Patient> patientList = new ArrayList<Patient>();
try {
patientList = dqs.getPatientsWithNoProgram();
} catch (UnexpectedRollbackException unre) {
unre.printStackTrace();
}
return patientList;
}
/**
* gets patients by checking Type of abnormal datas
*
* @param programIdKey
* @param session
* @param valueRangeType
* @return
*/
public List<Patient> checkTypeController(String programIdKey, String valueRangeType)
throws Exception {
// log.info("@@@@@@@@@@@@@@@@@@@@@ programIdKey "+programIdKey);
List<Patient> patients = new ArrayList<Patient>();
List<Patient> activePatients = new ArrayList<Patient>();
List<Patient> patientsInHIVProgram = new ArrayList<Patient>();
if (programIdKey.equals("PatientsWithNoProgramsEnrollmentDates")) {
patients = getPatientsWithNoProgramsEnrollmentDates();
DataqualityFormController.setMsgToDisplay("Patients with no programs enrollment dates");
} else if (programIdKey.equals("PatientsDrugsWithDiscontinuedDateWithoutStartDate")) {
patients = getPatientsDrugsWithDiscontinuedDateWithoutStartDate();
DataqualityFormController.setMsgToDisplay(
"Patients Drugs with discontinued date without start date");
} else if (programIdKey.equals("DrugsWithDiscontinuedDateHigherThanDrugStartDate")) {
patients = getPatientsWithDiscontinuedDateHigherThanDrugStartDate();
DataqualityFormController.setMsgToDisplay("");
} else if (programIdKey.equals("DrugsWithoutStartDate")) {
patients = getPatientsWithoutStartDate();
DataqualityFormController.setMsgToDisplay("Patients with Drugs without start date");
} else if (programIdKey.equals("patientrsWithoutNames")) {
patients = getPatientsWithoutNames();
DataqualityFormController.setMsgToDisplay("Patientrs without names");
} else if (programIdKey.equals("patientInAnyHivProgramWithoutAdmitionMode")) {
// log.info("top patientInAnyHivProgramWithoutAdmitionMode");
patientsInHIVProgram = new ArrayList<Patient>();
List<Patient> patientsWithNoAdmitionMode = new ArrayList<Patient>();
// getting programs
ProgramWorkflowService programService = Context.getProgramWorkflowService();
Program hivProgram = programService.getProgram(getGlobalProperty("HIVProgramId"));
patientsInHIVProgram = getPatientsCurrentlyInHIVProgram(hivProgram);
patientsWithNoAdmitionMode =
getPatientWithoutAdmitionModeConcept(
getConcept(getGlobalProperty("concept.methodOfEnrollement")));
for (Patient patient : patientsWithNoAdmitionMode) {
if (patientsInHIVProgram.contains(patient)) {
patients.add(patient);
}
}
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.patientInAnyHivProgramWithoutAdmitionMode");
log.info("bottom patientInAnyHivProgramWithoutAdmitionMode");
} else if (programIdKey.equals("patientsWithoutProgram")) {
log.info("top patientsWithoutProgram");
patients = getPatientWithoutProgram();
DataqualityFormController.setMsgToDisplay("tracdataquality.indicator.patientsWithoutProgram");
log.info("bottom patientsWithoutProgram");
} else if (programIdKey.equals("patientsWithnoWeight")) {
log.info("top patientsWithnoWeight");
Concept concept = getConcept(getGlobalProperty("concept.weight"));
patients = getPatientWithoutAgivenConcept(concept);
DataqualityFormController.setMsgToDisplay("tracdataquality.indicator.patientsWithnoWeight");
log.info("bottom patientsWithnoWeight");
} else if (programIdKey.equals("patientsWithNoHeight")) {
log.info("top patientsWithNoHeight");
Concept concept = getConcept(getGlobalProperty("concept.height"));
patients = getPatientWithoutAgivenConcept(concept);
DataqualityFormController.setMsgToDisplay("tracdataquality.indicator.patientsWithNoHeight");
log.info("bottom patientsWithNoHeight");
} else if (programIdKey.equals("patientWithNoHIVViralLoad")) {
log.info("top patientWithNoHIVViralLoad");
List<Patient> patientsWithNoViralLoad = new ArrayList<Patient>();
Concept viralLoadConcept = getConcept(getGlobalProperty("concept.viralLoad"));
ProgramWorkflowService programService = Context.getProgramWorkflowService();
Program hivProgram = programService.getProgram(getGlobalProperty("HIVProgramId"));
patientsWithNoViralLoad = getPatientWithoutAgivenConcept(viralLoadConcept);
patientsInHIVProgram = getPatientsCurrentlyInHIVProgram(hivProgram);
for (Patient patient : patientsInHIVProgram) {
if (patientsWithNoViralLoad.contains(patient)) {
patients.add(patient);
}
}
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.patientWithNoHIVViralLoad");
log.info("bottom patientWithNoHIVViralLoad");
} else if (programIdKey.equals("patientWithHIVPositiveAndNoCD4")) {
log.info("top patientWithHIVPositiveAndNoCD4");
List<Patient> patientsWithNoCD4 = new ArrayList<Patient>();
patientsInHIVProgram = new ArrayList<Patient>();
Concept cd4 = getConcept(getGlobalProperty("concept.cd4_count"));
ProgramWorkflowService programService = Context.getProgramWorkflowService();
Program hivProgram = programService.getProgram(getGlobalProperty("HIVProgramId"));
patientsWithNoCD4 = getPatientWithoutAgivenConcept(cd4);
patientsInHIVProgram = getPatientsCurrentlyInHIVProgram(hivProgram);
for (Patient patient : patientsInHIVProgram) {
if (patientsWithNoCD4.contains(patient)) {
patients.add(patient);
}
}
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.patientWithHIVPositiveAndNoCD4");
log.info("bottom patientWithHIVPositiveAndNoCD4");
} else if (programIdKey.equals("patientWithNoWhoStage")) {
log.info("top patientWithNoWhoStage");
Concept concept = getConcept(getGlobalProperty("concept.whoStage"));
patients = getPatientWithoutAgivenConcept(concept);
DataqualityFormController.setMsgToDisplay("tracdataquality.indicator.patientWithNoWhoStage");
log.info("bottom patientWithNoWhoStage");
} else if (programIdKey.equals("patientWithMoreKgs")) {
log.info("top patientWithMoreKgs");
// log.info("!!!!!!!!!!!!!!!!!!!!!!!! am getting in if statment");
Concept concept = getConcept(getGlobalProperty("concept.weight"));
// log.info(" !!!@@@@###$$%%^^&&**(())__++++++++++++++++ "+concept);
double valueRange = Double.parseDouble(valueRangeType);
// log.info("!!!!!!!!!!!!!!!!!!!!!!! !!!@@@@###$$%%^^&&**(())__++++++++++++++++
// "+valueRange);
patients = getPatientsWithMoreValueOnConcept(concept, valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " Weight");
log.info("bottom patientWithMoreKgs");
} else if (programIdKey.equals("patientsWithMoreHeight")) {
log.info("top patientsWithMoreHeight");
Concept concept = getConcept(getGlobalProperty("concept.height"));
double valueRange = Double.parseDouble(valueRangeType);
patients = getPatientsWithMoreValueOnConcept(concept, valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " height");
log.info("bottom patientsWithMoreHeight");
} else if (programIdKey.equals("patientsWithMoreBMI")) {
log.info("top patientsWithMoreBMI");
Concept concept = getConcept(getGlobalProperty("concept.BMI"));
double valueRange = Double.parseDouble(valueRangeType);
patients = getPatientsWithMoreValueOnConcept(concept, valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " BMI");
log.info("bottom patientsWithMoreBMI");
} else if (programIdKey.equals("patientsWithMoreBLOODOXYGENSATURATION")) {
log.info("top patientsWithMoreBLOODOXYGENSATURATION");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.bloodOxygenSaturation")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " BLOODOXYGENSATURATION");
log.info("bottom patientsWithMoreBLOODOXYGENSATURATION");
} else if (programIdKey.equals("patientsWithMoreDIASTOLICBLOODPRESSURE")) {
log.info("top patientsWithMoreDIASTOLICBLOODPRESSURE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.diastolicBloodPressure")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " of DIASTOLICBLOODPRESSURE");
log.info("bottom patientsWithMoreDIASTOLICBLOODPRESSURE");
} else if (programIdKey.equals("patientsWithMoreHEADCIRCUMFERENCE")) {
log.info("top patientsWithMoreHEADCIRCUMFERENCE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.headCircumference")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " HEADCIRCUMFERENCE");
log.info("bottom patientsWithMoreHEADCIRCUMFERENCE");
} else if (programIdKey.equals("patientsWithMoreKARNOFSKYPERFORMANCESCORE")) {
log.info("top patientsWithMoreKARNOFSKYPERFORMANCESCORE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.karnofskyPerformanceScore")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " of KARNOFSKYPERFORMANCESCORE");
log.info("bottom patientsWithMoreKARNOFSKYPERFORMANCESCORE");
} else if (programIdKey.equals("patientsWithMorePULSE")) {
log.info("top patientsWithMorePULSE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.pulse")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " PULSE");
log.info("bottom patientsWithMorePULSE");
} else if (programIdKey.equals("patientsWithMoreRESPIRATORYRATE")) {
log.info("top patientsWithMoreRESPIRATORYRATE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.respiratoryRate")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " RESPIRATORYRATE");
log.info("bottom patientsWithMoreRESPIRATORYRATE");
} else if (programIdKey.equals("patientsWithMoreSYSTOLICBLOODPRESSURE")) {
log.info("top patientsWithMoreSYSTOLICBLOODPRESSURE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.systolicBloodPressure")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients with more than " + valueRange + " SYSTOLICBLOODPRESSURE");
log.info("bottom patientsWithMoreSYSTOLICBLOODPRESSURE");
} else if (programIdKey.equals("patientsWithMoreTEMPERATURE")) {
log.info("top patientsWithMoreTEMPERATURE");
double valueRange = Double.parseDouble(valueRangeType);
patients =
getPatientsWithMoreValueOnConcept(
getConcept(getGlobalProperty("concept.temperature")), valueRange);
DataqualityFormController.setMsgToDisplay(
"Patients.With.More.Than" + valueRange + " TEMPERATURE");
log.info("bottom patientsWithMoreTEMPERATURE");
} else if (programIdKey.equals("patientWithNoContactInformation")) {
log.info("top patientWithNoContactInformation");
List<Patient> patientsWithoutPhoneNumber = new ArrayList<Patient>();
List<Patient> patientsWithoutAlternativePhoneNumber = new ArrayList<Patient>();
patientsWithoutPhoneNumber =
getPatientWithoutAgivenConcept(
getConcept(getGlobalProperty("concept.contactPhoneNumber")));
patientsWithoutAlternativePhoneNumber =
getPatientWithoutAgivenConcept(getConcept(getGlobalProperty("concept.phoneNumber")));
for (Patient patient : patientsWithoutPhoneNumber) {
if (patientsWithoutAlternativePhoneNumber.contains(patient)) {
patients.add(patient);
}
}
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.patientWithNoContactInformation");
log.info("bottom patientWithNoContactInformation");
} else if (programIdKey.equals("patientWithNoTRACnet")) {
log.info("top patientWithNoTRACnet");
// log.info("$$$$$$$$$$$$$$$$$$$$$$$$$ this is the tracnet
// type"+getGlobalProperty("patientIdentifierType.TRACnetID"));
patients =
getPatientWithNoGivenIdentifier(getGlobalProperty("patientIdentifierType.TRACnetID"));
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.PatientsWithoutTRACnetID");
log.info("bottom patientWithNoTRACnet");
} else if (programIdKey.equals("patientWithNoNID")) {
log.info("top patientWithNoNID");
patients = getPatientWithNoGivenIdentifier(getGlobalProperty("patientIdentifierType.NID"));
DataqualityFormController.setMsgToDisplay("tracdataquality.indicator.PatientsWithoutNID");
log.info("bottom patientWithNoNID");
} else if (programIdKey.equals("exitedPatientWithProgram")) {
log.info("top exitedPatientWithProgram");
List<Patient> patientsExitedFromCare = new ArrayList<Patient>();
List<Patient> patientWithoutProgram = new ArrayList<Patient>();
patientsExitedFromCare =
getPatientWithAgivenConcept(getConcept(getGlobalProperty("concept.reasonExitedCare")));
patientWithoutProgram = getPatientWithoutProgram();
for (Patient patient : patientsExitedFromCare) {
if (!patientWithoutProgram.contains(patient)) {
patients.add(patient);
}
}
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.exitedPatientWithProgram");
log.info("bottom exitedPatientWithProgram");
} else if (programIdKey.equals("patientInAnyHIVProgramWithNoHIVTestDate")) {
log.info("top patientInAnyHIVProgramWithNoHIVTestDate");
// List<Patient> patientsHIVProgram = new ArrayList<Patient>();
List<Patient> patientsWithoutHIVTestDate = new ArrayList<Patient>();
// ProgramWorkflowService programService = Context.getProgramWorkflowService();
patientsWithoutHIVTestDate =
getPatientWithoutAdmitionModeConcept(
getConcept(getGlobalProperty("concept.HIVTestDate")));
log.info("number of patients with no hiv test date : " + patientsWithoutHIVTestDate.size());
patients.addAll(patientsWithoutHIVTestDate);
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.patientInAnyHIVProgramWithNoHIVTestDate");
log.info("bottom patientInAnyHIVProgramWithNoHIVTestDate");
} else if (programIdKey.equals("PatientsWhoStoppedRegimenAndReasonIsNotRecorded")) {
log.info("top PatientsWhoStoppedRegimenAndReasonIsNotRecorded");
List<Integer> patientIds = new ArrayList<Integer>();
DataQualityService serviceQualityCheck =
((DataQualityService) Context.getService(DataQualityService.class));
patientIds = serviceQualityCheck.getPatientsWhoStoppedDrugWithoutDiscontinuedReason();
for (Integer integer : patientIds) {
Patient patient = getPatientById(integer);
patients.add(patient);
}
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.PatientsWhoStoppedRegimenAndReasonIsNotRecorded");
log.info("bottom PatientsWhoStoppedRegimenAndReasonIsNotRecorded");
} else if (programIdKey.equals("PatientsPediatricsWhoHaveAdultWhoStage")) {
log.info("top PatientsPediatricsWhoHaveAdultWhoStage");
patients = getPatientsPediatricsWhoHaveAdultWhoStage();
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.PatientsPediatricWhoHaveAdultWhoStage");
/*log.info("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@bottom PatientsPediatricsWhoHaveAdultWhoStage"
+ patients);*/
} else if (programIdKey.equals("PatientsAdultWhoHaveChildWhoStage")) {
log.info("top PatientsAdultWhoHaveChildWhoStage");
patients = getPatientsAdultWhoHavePedsWhoStage();
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.PatientsAdultWhoHaveChildWhoStage");
log.info("bottom PatientsAdultWhoHaveChildWhoStage");
} else if (programIdKey.equals("PatientsWhoAreInPMTCTWithNoCPNId")) {
log.info("top PatientsWhoAreInPMTCTWithNoCPNId");
patients = getPatientsWhoAreInPMTCTWithNoCPNId();
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.PatientsInPMTCTWithNoCPNid");
log.info("bottom PatientsWhoAreInPMTCTWithNoCPNId");
} else if (programIdKey.equals("PatientsWithNoReturnVisitDate")) {
log.info("top PatientsWithNoReturnVisitDate");
patients =
getPatientWithoutAgivenConcept(getConcept(getGlobalProperty("concept.returnVisitDate")));
DataqualityFormController.setMsgToDisplay(
"tracdataquality.indicator.PatientsWithNoReturnVisitDate");
log.info("bottom PatientsWithNoReturnVisitDate");
}
DataQualityService serviceQualityCheck =
((DataQualityService) Context.getService(DataQualityService.class));
List<Integer> exitedPatient = serviceQualityCheck.getPatientsExitedFromCare();
// log.info("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!"+exitedPatient);
// List<Integer> patientsExited = getPatientsExitedFromCare();
for (Patient patient : patients) {
// && !patientsExited.contains(patient.getPatientId())
// = getPatientsExitedFromCare();
if (!patient.isVoided() && !exitedPatient.contains(patient.getPatientId())) {
activePatients.add(patient);
}
}
Collections.sort(activePatients, new PatientSortByName());
return activePatients;
}
/**
* gets patients with a given Concept
*
* @param concept
* @return patients
*/
public List<Patient> getPatientWithAgivenConcept(Concept concept) {
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
List<Patient> patientList = dqs.getPatientsWithObs(concept);
return patientList;
}
/**
* gets patients who are currently in a program
*
* @param session
* @return patientsWhoHaveProgram
*/
public List<Patient> getPatientWhoHaveProgram() {
DataQualityService dqs = ((DataQualityService) Context.getService(DataQualityService.class));
return dqs.getPatientWhoHaveProgram();
}
/**
* gets patients by program
*
* @param program
* @return patients
*/
public List<Patient> getPatientsByProgram(Program program) {
DataQualityService serviceQualityCheck =
((DataQualityService) Context.getService(DataQualityService.class));
return serviceQualityCheck.getPatientsByProgram(program);
}