public static void main(String[] args) throws Exception {
DaoGeneOptimized daoGene = DaoGeneOptimized.getInstance();
daoGene.deleteAllRecords();
if (args.length == 0) {
System.out.println("command line usage: importGenes.pl <ncbi_genes.txt>");
System.exit(1);
}
ProgressMonitor pMonitor = new ProgressMonitor();
pMonitor.setConsoleMode(true);
File geneFile = new File(args[0]);
System.out.println("Reading data from: " + geneFile.getAbsolutePath());
int numLines = FileUtil.getNumLines(geneFile);
System.out.println(" --> total number of lines: " + numLines);
pMonitor.setMaxValue(numLines);
ImportGeneData parser = new ImportGeneData(geneFile, pMonitor);
parser.importData();
ConsoleUtil.showWarnings(pMonitor);
System.err.println("Done.");
}
