protected void removeOnlineReviewDocument(
ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument,
ProtocolSubmissionBase submission,
String annotation) {
if (protocolOnlineReviewDocument != null) {
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Found protocolOnlineReviewDocument %s, removing it.",
protocolOnlineReviewDocument.getDocumentNumber()));
}
cancelOnlineReviewDocument(protocolOnlineReviewDocument, submission, annotation);
protocolOnlineReviewDocument
.getProtocolOnlineReview()
.setProtocolOnlineReviewStatusCode(
ProtocolOnlineReviewStatus.REMOVED_CANCELLED_STATUS_CD);
List<CommitteeScheduleMinuteBase> reviewComments =
protocolOnlineReviewDocument.getProtocolOnlineReview().getCommitteeScheduleMinutes();
List<CommitteeScheduleMinuteBase> deletedReviewComments =
new ArrayList<CommitteeScheduleMinuteBase>();
getReviewerCommentsService().deleteAllReviewComments(reviewComments, deletedReviewComments);
getReviewerCommentsService().saveReviewComments(reviewComments, deletedReviewComments);
submission
.getProtocolReviewers()
.remove(protocolOnlineReviewDocument.getProtocolOnlineReview().getProtocolReviewer());
getBusinessObjectService().save(protocolOnlineReviewDocument.getProtocolOnlineReview());
}
}
/**
* Creates a new ProtocolReviewDocument.
*
* <p>Handles creating the workflow document, and the underlying ProtocolReview BO linking the
* protocol, submission, and reviewer.
*
* @param protocolSubmission The protocol submission
* @param protocolReviewerBean The bean that holds
* @param documentDescription the description for the created document
* @param documentExplanation the explanation for the created document
* @param documentOrganizationNumber the organizationNumber for the created document
* @param principalId The principalId to use when creating the workflow document. Usually this
* should be the principal of the user creating the review.
* @return
* @throws WorkflowException
*/
protected ProtocolOnlineReviewDocumentBase createProtocolOnlineReviewDocument(
ProtocolSubmissionBase protocolSubmission,
ProtocolReviewer protocolReviewer,
String documentDescription,
String documentExplanation,
String documentOrganizationDocumentNumber,
Date dateRequested,
Date dateDue,
String principalId)
throws WorkflowException {
ProtocolOnlineReviewDocumentBase protocolReviewDocument;
Person person = personService.getPerson(principalId);
WorkflowDocument workflowDocument =
workflowDocumentService.createWorkflowDocument(getProtocolOLRDocumentTypeHook(), person);
DocumentHeader docHeader = new DocumentHeader();
docHeader.setWorkflowDocument(workflowDocument);
docHeader.setDocumentNumber(workflowDocument.getDocumentId().toString());
protocolReviewDocument = getNewProtocolOnlineReviewDocumentInstanceHook();
protocolReviewDocument.setDocumentNumber(docHeader.getDocumentNumber());
protocolReviewDocument.setDocumentHeader(docHeader);
protocolReviewDocument.getProtocolOnlineReview().setProtocol(protocolSubmission.getProtocol());
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolId(protocolSubmission.getProtocolId());
protocolReviewDocument.getProtocolOnlineReview().setProtocolSubmission(protocolSubmission);
protocolReviewDocument
.getProtocolOnlineReview()
.setSubmissionIdFk(protocolSubmission.getSubmissionId());
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolOnlineReviewStatusCode(getProtocolOLRSavedStatusCodeHook());
protocolReviewDocument
.getProtocolOnlineReview()
.setDateRequested(
dateRequested == null ? new Date((new java.util.Date()).getTime()) : dateRequested);
protocolReviewDocument.getProtocolOnlineReview().setDateDue(dateDue);
protocolReviewDocument
.getProtocolOnlineReview()
.setProtocolReviewerId(protocolReviewer.getProtocolReviewerId());
protocolReviewDocument.getProtocolOnlineReview().setProtocolReviewer(protocolReviewer);
docHeader.setDocumentDescription(documentDescription);
docHeader.setOrganizationDocumentNumber(documentOrganizationDocumentNumber);
docHeader.setExplanation(documentExplanation);
documentService.saveDocument(protocolReviewDocument);
return protocolReviewDocument;
}
protected void finalizeOnlineReviewDocument(
ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument,
ProtocolSubmissionBase submission,
String annotation) {
try {
final String principalId =
identityManagementService
.getPrincipalByPrincipalName(KRADConstants.SYSTEM_USER)
.getPrincipalId();
WorkflowDocument workflowDocument =
WorkflowDocumentFactory.loadDocument(
principalId, protocolOnlineReviewDocument.getDocumentNumber());
ProtocolOnlineReviewBase review = protocolOnlineReviewDocument.getProtocolOnlineReview();
review.addActionPerformed(
"Finalize:"
+ workflowDocument.getStatus().getCode()
+ ":"
+ review.getProtocolOnlineReviewStatusCode());
if (workflowDocument.isEnroute()
|| workflowDocument.isInitiated()
|| workflowDocument.isSaved()) {
workflowDocument.superUserBlanketApprove(annotation);
}
} catch (Exception e) {
String errorMessage =
String.format(
"Workflow exception generated while executing superUserApprove on document %s in finalizeOnlineReviewDocument. Message:%s",
protocolOnlineReviewDocument.getDocumentNumber(), e.getMessage());
LOG.error(errorMessage);
throw new RuntimeException(errorMessage, e);
}
}
@Override
public void removeOnlineReviewDocument(
String personId,
boolean nonEmployeeFlag,
ProtocolSubmissionBase submission,
String annotation) {
ProtocolOnlineReviewDocumentBase protocolOnlineReviewDocument =
this.getProtocolOnlineReviewDocument(personId, nonEmployeeFlag, submission);
ProtocolOnlineReviewBase submissionsProtocolOnlineReview = null;
for (ProtocolOnlineReviewBase rev : submission.getProtocolOnlineReviews()) {
if (rev.getProtocolOnlineReviewId()
.equals(
protocolOnlineReviewDocument.getProtocolOnlineReview().getProtocolOnlineReviewId())) {
submissionsProtocolOnlineReview = rev;
break;
}
}
if (submissionsProtocolOnlineReview == null) {
throw new IllegalStateException(
"Could not match OnlineReview document being removed to a protocolOnlineReview in the submission.");
}
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Processing request to remove online review for (personId=%s,nonEmployeeFlag=%s) from (protocol=%s,submission=%s)",
personId,
nonEmployeeFlag,
submission.getProtocol().getProtocolNumber(),
submission.getSubmissionNumber()));
}
if (protocolOnlineReviewDocument != null) {
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Found protocolOnlineReviewDocument %s, removing it.",
protocolOnlineReviewDocument.getDocumentNumber()));
}
cancelOnlineReviewDocument(protocolOnlineReviewDocument, submission, annotation);
submissionsProtocolOnlineReview.setProtocolOnlineReviewStatusCode(
getProtocolOLRRemovedCancelledStatusCodeHook());
List<CommitteeScheduleMinuteBase> reviewComments =
protocolOnlineReviewDocument.getProtocolOnlineReview().getCommitteeScheduleMinutes();
List<CommitteeScheduleMinuteBase> deletedReviewComments =
new ArrayList<CommitteeScheduleMinuteBase>();
getReviewerCommentsService().deleteAllReviewComments(reviewComments, deletedReviewComments);
getReviewerCommentsService().saveReviewComments(reviewComments, deletedReviewComments);
getBusinessObjectService().save(submissionsProtocolOnlineReview);
} else {
LOG.warn(
String.format(
"ProtocolBase Online Review document could not be found for (personId=%s,nonEmployeeFlag=%s) from (protocol=%s,submission=%s)",
personId,
nonEmployeeFlag,
submission.getProtocol().getProtocolNumber(),
submission.getSubmissionNumber()));
}
}