@Override
public List<ProtocolOnlineReviewBase> getProtocolReviews(String protocolNumber) {
ProtocolBase protocol = protocolFinderDao.findCurrentProtocolByNumber(protocolNumber);
List<ProtocolOnlineReviewBase> reviews = null;
if (protocol != null && protocol.getProtocolSubmission() != null) {
reviews = protocol.getProtocolSubmission().getProtocolOnlineReviews();
} else {
reviews = new ArrayList<ProtocolOnlineReviewBase>();
}
return reviews;
}
@Override
public List<CommitteeMembershipBase> getAvailableCommitteeMembersForCurrentSubmission(
ProtocolBase protocol) {
List<CommitteeMembershipBase> results = new ArrayList<CommitteeMembershipBase>();
ProtocolSubmissionBase submission = protocol.getProtocolSubmission();
submission.refreshReferenceObject("protocolOnlineReviews");
if (LOG.isDebugEnabled()) {
LOG.debug(
String.format(
"Fetching available committee members for protocol %s, submission %s",
protocol.getProtocolNumber(), submission.getSubmissionNumber()));
}
List<ProtocolOnlineReviewBase> currentReviews = submission.getProtocolOnlineReviews();
List<CommitteeMembershipBase> committeeMembers =
getCommitteeService()
.getAvailableMembers(submission.getCommitteeId(), submission.getScheduleId());
// TODO: Make this better.
for (CommitteeMembershipBase member : committeeMembers) {
boolean found = false;
for (ProtocolOnlineReviewBase review : currentReviews) {
if (review.getProtocolReviewer().isProtocolReviewerFromCommitteeMembership(member)
&& review.isActive()) {
found = true;
break;
}
}
if (!found && !isProtocolPersonnel(protocol, member)) {
results.add(member);
}
}
return results;
}
@Override
public List<ProtocolOnlineReviewDocumentBase> getProtocolReviewDocumentsForCurrentSubmission(
ProtocolBase protocol) {
List<ProtocolOnlineReviewDocumentBase> onlineReviewDocuments =
new ArrayList<ProtocolOnlineReviewDocumentBase>();
ProtocolSubmissionBase submission = protocol.getProtocolSubmission();
List<ProtocolOnlineReviewBase> reviews =
findProtocolOnlineReviews(protocol.getProtocolId(), submission.getSubmissionId());
for (ProtocolOnlineReviewBase review : reviews) {
if (review.isActive()) {
review.refresh();
try {
onlineReviewDocuments.add(
(ProtocolOnlineReviewDocumentBase)
(documentService.getByDocumentHeaderId(
review.getProtocolOnlineReviewDocument().getDocumentNumber())));
} catch (WorkflowException e) {
throw new RuntimeException(
String.format(
"Could not load ProtocolOnlineReviewBase docuemnt %s due to WorkflowException: %s",
review.getProtocolOnlineReviewDocument().getDocumentNumber(), e.getMessage()),
e);
}
}
}
return onlineReviewDocuments;
}
@Override
protected ProtocolActionBase getNewDisapprovedInRoutingProtocolActionInstanceHook(
ProtocolBase protocol) {
return new IacucProtocolAction(
(IacucProtocol) protocol,
(IacucProtocolSubmission) protocol.getProtocolSubmission(),
IacucProtocolActionType.REJECTED_IN_ROUTING);
}
protected ProtocolDocument getReturnedVersionedDocument(ProtocolBase protocol) throws Exception {
getDocumentService()
.cancelDocument(
protocol.getProtocolDocument(),
"Protocol document cancelled - protocol has been returned for revisions.");
getProtocolOnlineReviewService()
.finalizeOnlineReviews(
protocol.getProtocolSubmission(),
"Protocol Review finalized - protocol has been returned for revisions.");
return (ProtocolDocument) getVersionedDocument(protocol);
}
protected void performDisapprove(ProtocolBase protocol) throws Exception {
if (protocol.getProtocolDocument() != null) {
WorkflowDocument currentWorkflowDocument =
protocol.getProtocolDocument().getDocumentHeader().getWorkflowDocument();
if (currentWorkflowDocument != null) {
currentWorkflowDocument.disapprove(
"Protocol document disapproved after committee decision");
}
}
getProtocolOnlineReviewService()
.cancelOnlineReviews(
protocol.getProtocolSubmission(),
"Protocol Review cancelled - protocol has been disapproved.");
}