private void setSubmissionCheckListinfo(
org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite protocolSubmission,
SubmissionDetails protocolSubmissionDetail) {
SubmissionChecklistInfo submissionChecklistInfo =
protocolSubmissionDetail.addNewSubmissionChecklistInfo();
String formattedCode = new String();
Collection<ProtocolExemptStudiesCheckListItem> protocolExemptCheckList =
getBusinessObjectService()
.findMatching(
ProtocolExemptStudiesCheckListItem.class,
Collections.singletonMap("submissionIdFk", protocolSubmission.getSubmissionId()));
for (ProtocolExemptStudiesCheckListItem protocolExemptStudiesCheckListBean :
protocolExemptCheckList) {
Checklists checkListItem = submissionChecklistInfo.addNewChecklists();
checkListItem.setChecklistCode(
protocolExemptStudiesCheckListBean.getExemptStudiesCheckListCode());
checkListItem.setChecklistDescription(
protocolExemptStudiesCheckListBean.getExemptStudiesCheckListItem().getDescription());
formattedCode =
formattedCode
+ "("
+ protocolExemptStudiesCheckListBean.getExemptStudiesCheckListCode()
+ ") ";
}
if (formattedCode.length() > 0) {
submissionChecklistInfo.setChecklistCodesFormatted(
formattedCode); // this will have format (3) (7) like that...
}
Collection<ProtocolExpeditedReviewCheckListItem> vecExpeditedCheckList =
getBusinessObjectService()
.findMatching(
ProtocolExpeditedReviewCheckListItem.class,
Collections.singletonMap("submissionIdFk", protocolSubmission.getSubmissionId()));
for (ProtocolExpeditedReviewCheckListItem protocolReviewTypeCheckListBean :
vecExpeditedCheckList) {
Checklists checkListItem = submissionChecklistInfo.addNewChecklists();
checkListItem.setChecklistCode(
protocolReviewTypeCheckListBean.getExpeditedReviewCheckListCode());
checkListItem.setChecklistDescription(
protocolReviewTypeCheckListBean.getExpeditedReviewCheckListItem().getDescription());
formattedCode =
formattedCode
+ "("
+ protocolReviewTypeCheckListBean.getExpeditedReviewCheckListCode()
+ ") ";
}
if (formattedCode.length() > 0) {
submissionChecklistInfo.setChecklistCodesFormatted(
formattedCode); // this will have format (3) (7) like that...
}
}
private ProtocolAction findProtocolActionForSubmission(
org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite protocolSubmission,
Protocol protocol) {
List<ProtocolActionBase> protocolActions = protocol.getProtocolActions();
for (ProtocolActionBase protocolAction : protocolActions) {
if (protocolAction.getSubmissionNumber() != null
&& protocolAction
.getSubmissionNumber()
.equals(protocolSubmission.getSubmissionNumber())) {
return (ProtocolAction) protocolAction;
}
}
return null;
}
private void setProtocolSubmissionReviewers(
org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite protocolSubmission,
SubmissionDetails protocolSubmissionDetail) {
Collection<ProtocolReviewer> vecReviewers =
getBusinessObjectService()
.findMatching(
ProtocolReviewer.class,
Collections.singletonMap("submissionIdFk", protocolSubmission.getSubmissionId()));
for (org.kuali.kra.protocol.actions.submit.ProtocolReviewer protocolReviewer : vecReviewers) {
protocolReviewer.refreshNonUpdateableReferences();
edu.mit.irb.irbnamespace.ProtocolReviewerDocument.ProtocolReviewer protocolReviewerType =
protocolSubmissionDetail.addNewProtocolReviewer();
setPerson((ProtocolReviewer) protocolReviewer, protocolReviewerType);
protocolReviewerType.setReviewerTypeDesc(
protocolReviewer.getProtocolReviewerType().getDescription());
protocolReviewerType.setReviewerTypeCode(
new BigInteger(String.valueOf(protocolReviewer.getReviewerTypeCode())));
}
}
public Schedule getSchedule(CommitteeSchedule committeeSchedule) {
Schedule schedule = Schedule.Factory.newInstance();
setScheduleMasterData(committeeSchedule, schedule.addNewScheduleMasterData());
PreviousSchedule prevSchedule = schedule.addNewPreviousSchedule();
setPreviousSchedule(committeeSchedule, prevSchedule.addNewScheduleMasterData());
NextSchedule nextScheduleType = schedule.addNewNextSchedule();
setNextSchedule(committeeSchedule, nextScheduleType.addNewScheduleMasterData());
getIrbPrintXmlUtilService().setMinutes(committeeSchedule, schedule);
setAttendance(committeeSchedule, schedule);
committeeSchedule.refreshReferenceObject("protocolSubmissions");
List<org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite> submissions =
committeeSchedule.getLatestProtocolSubmissions();
for (org.kuali.kra.irb.actions.submit.ProtocolSubmissionLite protocolSubmission : submissions) {
ProtocolSubmission protocolSubmissionType = schedule.addNewProtocolSubmission();
SubmissionDetails protocolSubmissionDetail = protocolSubmissionType.addNewSubmissionDetails();
ProtocolSummary protocolSummary = protocolSubmissionType.addNewProtocolSummary();
ProtocolMasterData protocolMaster = protocolSummary.addNewProtocolMasterData();
String followUpAction = null;
String actionTypeCode = null;
Protocol protocol =
getBusinessObjectService()
.findByPrimaryKey(
Protocol.class,
Collections.singletonMap("protocolId", protocolSubmission.getProtocolId()));
List<ProtocolActionBase> protocolActions = protocol.getProtocolActions();
for (ProtocolActionBase protocolAction : protocolActions) {
actionTypeCode = protocolAction.getProtocolActionTypeCode();
if (actionTypeCode.equals(EXPEDIT_ACTION_TYPE_CODE)
|| actionTypeCode.equals(EXEMPT_ACTION_TYPE_CODE)) {
if (protocolAction.getFollowupActionCode() != null
&& protocolAction.getFollowupActionCode().equals(FOLLOW_UP_ACTION_CODE)) {
followUpAction = protocolAction.getFollowupActionCode();
}
break;
}
}
protocolMaster.setProtocolNumber(protocol.getProtocolNumber());
protocolMaster.setSequenceNumber(
new BigInteger(String.valueOf(protocol.getSequenceNumber())));
protocolMaster.setProtocolTitle(protocol.getTitle());
protocolMaster.setProtocolStatusCode(
new BigInteger(String.valueOf(protocol.getProtocolStatusCode())));
protocolMaster.setProtocolStatusDesc(protocol.getProtocolStatus().getDescription());
protocolMaster.setProtocolTypeCode(
new BigInteger(String.valueOf(protocol.getProtocolTypeCode())));
protocolMaster.setProtocolTypeDesc(protocol.getProtocolType().getDescription());
if (protocol.getDescription() != null) {
protocolMaster.setProtocolDescription(protocol.getDescription());
}
if (protocol.getApprovalDate() != null) {
protocolMaster.setApprovalDate(
getDateTimeService().getCalendar(protocol.getApprovalDate()));
}
if (protocol.getExpirationDate() != null) {
protocolMaster.setExpirationDate(
getDateTimeService().getCalendar(protocol.getExpirationDate()));
}
if (protocol.getFdaApplicationNumber() != null) {
protocolMaster.setFdaApplicationNumber(protocol.getFdaApplicationNumber());
}
if (protocol.getReferenceNumber1() != null) {
protocolMaster.setRefNumber1(protocol.getReferenceNumber1());
}
if (protocol.getReferenceNumber2() != null) {
protocolMaster.setRefNumber2(protocol.getReferenceNumber2());
}
protocolSubmissionDetail.setProtocolNumber(protocolSubmission.getProtocolNumber());
if (protocolSubmission.getProtocolSubmissionType() != null) {
protocolSubmissionDetail.setSubmissionTypeDesc(
protocolSubmission.getProtocolSubmissionType().getDescription());
}
if (protocolSubmission.getProtocolReviewTypeCode() != null) {
protocolSubmissionDetail.setProtocolReviewTypeCode(
new BigInteger(protocolSubmission.getProtocolReviewTypeCode()));
}
if (protocolSubmission.getProtocolReviewType() != null) {
protocolSubmissionDetail.setProtocolReviewTypeDesc(
protocolSubmission.getProtocolReviewType().getDescription());
}
if (protocolSubmission.getSubmissionTypeCode() != null) {
protocolSubmissionDetail.setSubmissionTypeCode(
new BigInteger(String.valueOf(protocolSubmission.getSubmissionTypeCode())));
}
if (protocolSubmission.getProtocolSubmissionType() != null) {
protocolSubmissionDetail.setSubmissionTypeDesc(
protocolSubmission.getProtocolSubmissionType().getDescription());
}
if (protocolSubmission.getSubmissionNumber() != null) {
protocolSubmissionDetail.setSubmissionNumber(
new BigInteger(String.valueOf(protocolSubmission.getSubmissionNumber())));
}
if (protocolSubmission.getSubmissionStatusCode() != null) {
protocolSubmissionDetail.setSubmissionStatusCode(
new BigInteger(String.valueOf(protocolSubmission.getSubmissionStatusCode())));
}
if (protocolSubmission.getSubmissionStatus() != null) {
protocolSubmissionDetail.setSubmissionStatusDesc(
protocolSubmission.getSubmissionStatus().getDescription());
}
if (protocolSubmission.getSubmissionTypeQualifierCode() != null) {
protocolSubmissionDetail.setSubmissionTypeQualifierCode(
new BigInteger(protocolSubmission.getSubmissionTypeQualifierCode()));
}
if (protocolSubmission.getProtocolSubmissionQualifierType() != null) {
protocolSubmissionDetail.setSubmissionTypeQualifierDesc(
protocolSubmission.getProtocolSubmissionQualifierType().getDescription());
}
if (protocolSubmission.getYesVoteCount() != null) {
protocolSubmissionDetail.setYesVote(
BigInteger.valueOf(protocolSubmission.getYesVoteCount()));
} else {
protocolSubmissionDetail.setYesVote(BigInteger.ZERO);
}
if (protocolSubmission.getNoVoteCount() != null) {
protocolSubmissionDetail.setNoVote(BigInteger.valueOf(protocolSubmission.getNoVoteCount()));
} else {
protocolSubmissionDetail.setNoVote(BigInteger.ZERO);
}
if (protocolSubmission.getAbstainerCount() != null) {
protocolSubmissionDetail.setAbstainerCount(
BigInteger.valueOf(protocolSubmission.getAbstainerCount()));
} else {
protocolSubmissionDetail.setAbstainerCount(BigInteger.ZERO);
}
protocolSubmissionDetail.setVotingComments(protocolSubmission.getVotingComments());
setProtocolSubmissionAction(protocolSubmission, protocol, protocolSubmissionDetail);
if (protocolSubmission.getSubmissionDate() != null) {
protocolSubmissionDetail.setSubmissionDate(
getDateTimeService().getCalendar(protocolSubmission.getSubmissionDate()));
}
setSubmissionCheckListinfo(protocolSubmission, protocolSubmissionDetail);
setProtocolSubmissionReviewers(protocolSubmission, protocolSubmissionDetail);
List<ProtocolPersonBase> protocolPersons = protocol.getProtocolPersons();
for (ProtocolPersonBase protocolPerson : protocolPersons) {
if (protocolPerson
.getProtocolPersonRoleId()
.equals(ProtocolPersonRole.ROLE_PRINCIPAL_INVESTIGATOR)
|| protocolPerson
.getProtocolPersonRoleId()
.equals(ProtocolPersonRole.ROLE_CO_INVESTIGATOR)) {
Investigator investigator = protocolSummary.addNewInvestigator();
getIrbPrintXmlUtilService()
.setPersonRolodexType((ProtocolPerson) protocolPerson, investigator.addNewPerson());
if (protocolPerson
.getProtocolPersonRoleId()
.equals(ProtocolPersonRole.ROLE_PRINCIPAL_INVESTIGATOR)) {
investigator.setPIFlag(true);
}
}
}
List<ProtocolRiskLevel> cvRiskLevels = protocol.getProtocolRiskLevels();
for (ProtocolRiskLevel protocolRiskLevelBean : cvRiskLevels) {
edu.mit.irb.irbnamespace.ProtocolSummaryDocument.ProtocolSummary.RiskLevels riskLevelType =
protocolSummary.addNewRiskLevels();
riskLevelType.setRiskLevelDescription(
protocolRiskLevelBean.getRiskLevel().getDescription());
riskLevelType.setComments(protocolRiskLevelBean.getComments());
}
List<ProtocolFundingSource> vecFundingSource = (List) protocol.getProtocolFundingSources();
int fundingSourceTypeCode;
String fundingSourceName, fundingSourceCode;
for (ProtocolFundingSource protocolFundingSourceBean : vecFundingSource) {
protocolFundingSourceBean.refreshNonUpdateableReferences();
edu.mit.irb.irbnamespace.ProtocolSummaryDocument.ProtocolSummary.FundingSource
fundingSource = protocolSummary.addNewFundingSource();
fundingSourceCode = protocolFundingSourceBean.getFundingSourceNumber();
fundingSourceTypeCode =
Integer.valueOf(protocolFundingSourceBean.getFundingSourceTypeCode());
fundingSourceName = getFundingSourceNameForType(fundingSourceTypeCode, fundingSourceCode);
fundingSource.setFundingSourceName(fundingSourceName);
if (protocolFundingSourceBean.getFundingSourceType() != null) {
fundingSource.setTypeOfFundingSource(
protocolFundingSourceBean.getFundingSourceType().getDescription());
}
}
getIrbPrintXmlUtilService()
.setProcotolMinutes(committeeSchedule, protocolSubmission, protocolSubmissionType);
}
setOtherActionItems(committeeSchedule, schedule);
return schedule;
}
