Пример #1
0
 protected void codedTriple(
     Section section, String subject, String predicate, CodeableConcept cc) {
   for (Coding c : cc.getCoding()) {
     String s = getLinkedForm(c);
     if (s != null)
       section.triple(subject, predicate, s, c.hasDisplay() ? c.getDisplay() : cc.getText());
   }
 }
Пример #2
0
 protected void codedTriple(Subject subject, String predicate, CodeableConcept cc) {
   for (Coding c : cc.getCoding()) {
     String s = getLinkedForm(c);
     if (s != null)
       subject.predicate(
           predicate, new StringType(s), c.hasDisplay() ? c.getDisplay() : cc.getText());
   }
 }
Пример #3
0
 private ValidationResult verifyCodeInternal(ValueSet vs, CodeableConcept code) throws Exception {
   for (Coding c : code.getCoding()) {
     ValidationResult res = verifyCodeInternal(vs, c.getSystem(), c.getCode(), c.getDisplay());
     if (res.isOk()) return res;
   }
   if (code.getCoding().isEmpty())
     return new ValidationResult(IssueSeverity.ERROR, "None code provided");
   else
     return new ValidationResult(
         IssueSeverity.ERROR, "None of the codes are in the specified value set");
 }
Пример #4
0
 private String cacheId(CodeableConcept cc) {
   StringBuilder b = new StringBuilder();
   for (Coding c : cc.getCoding()) {
     b.append("#");
     b.append(cacheId(c));
   }
   return b.toString();
 }
  private ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult validateCodeIsInContains(
      List<ValueSetExpansionContainsComponent> contains,
      String theSystem,
      String theCode,
      Coding theCoding,
      CodeableConcept theCodeableConcept) {
    for (ValueSetExpansionContainsComponent nextCode : contains) {
      ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult result =
          validateCodeIsInContains(
              nextCode.getContains(), theSystem, theCode, theCoding, theCodeableConcept);
      if (result != null) {
        return result;
      }

      String system = nextCode.getSystem();
      String code = nextCode.getCode();

      if (isNotBlank(theCode)) {
        if (theCode.equals(code) && (isBlank(theSystem) || theSystem.equals(system))) {
          return new ValidateCodeResult(true, "Validation succeeded", nextCode.getDisplay());
        }
      } else if (theCoding != null) {
        if (StringUtils.equals(system, theCoding.getSystem())
            && StringUtils.equals(code, theCoding.getCode())) {
          return new ValidateCodeResult(true, "Validation succeeded", nextCode.getDisplay());
        }
      } else {
        for (Coding next : theCodeableConcept.getCoding()) {
          if (StringUtils.equals(system, next.getSystem())
              && StringUtils.equals(code, next.getCode())) {
            return new ValidateCodeResult(true, "Validation succeeded", nextCode.getDisplay());
          }
        }
      }
    }

    return null;
  }
Пример #6
0
 @Override
 public ValidationResult validateCode(CodeableConcept code, ValueSet vs) {
   try {
     if (vs.hasExpansion()) return verifyCodeInternal(vs, code);
     else {
       // we'll try expanding first; if that doesn't work, then we'll just pass it to the server to
       // validate
       // ... could be a problem if the server doesn't have the code systems we have locally, so we
       // try not to depend on the server
       try {
         ValueSetExpansionOutcome vse = expandVS(vs, true, false);
         if (vse.getValueset() != null) return verifyCodeInternal(vse.getValueset(), code);
       } catch (Exception e) {
         // failed? we'll just try the server
       }
       return verifyCodeExternal(vs, code, true);
     }
   } catch (Exception e) {
     return new ValidationResult(
         IssueSeverity.FATAL,
         "Error validating code \"" + code.toString() + "\": " + e.getMessage(),
         TerminologyServiceErrorClass.SERVER_ERROR);
   }
 }
  @Override
  public ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult validateCode(
      IPrimitiveType<String> theValueSetIdentifier,
      IIdType theId,
      IPrimitiveType<String> theCode,
      IPrimitiveType<String> theSystem,
      IPrimitiveType<String> theDisplay,
      Coding theCoding,
      CodeableConcept theCodeableConcept,
      RequestDetails theRequestDetails) {

    List<IIdType> valueSetIds = Collections.emptyList();

    boolean haveCodeableConcept =
        theCodeableConcept != null && theCodeableConcept.getCoding().size() > 0;
    boolean haveCoding = theCoding != null && theCoding.isEmpty() == false;
    boolean haveCode = theCode != null && theCode.isEmpty() == false;

    if (!haveCodeableConcept && !haveCoding && !haveCode) {
      throw new InvalidRequestException("No code, coding, or codeableConcept provided to validate");
    }
    if (!LogicUtil.multiXor(haveCodeableConcept, haveCoding, haveCode)) {
      throw new InvalidRequestException(
          "$validate-code can only validate (system AND code) OR (coding) OR (codeableConcept)");
    }

    boolean haveIdentifierParam =
        theValueSetIdentifier != null && theValueSetIdentifier.isEmpty() == false;
    if (theId != null) {
      valueSetIds = Collections.singletonList(theId);
    } else if (haveIdentifierParam) {
      Set<Long> ids =
          searchForIds(
              ValueSet.SP_IDENTIFIER, new TokenParam(null, theValueSetIdentifier.getValue()));
      valueSetIds = new ArrayList<IIdType>();
      for (Long next : ids) {
        valueSetIds.add(new IdType("ValueSet", next));
      }
    } else {
      if (theCode == null || theCode.isEmpty()) {
        throw new InvalidRequestException(
            "Either ValueSet ID or ValueSet identifier or system and code must be provided. Unable to validate.");
      }
      // String code = theCode.getValue();
      // String system = toStringOrNull(theSystem);
      LookupCodeResult result = myCodeSystemDao.lookupCode(theCode, theSystem, null, null);
      if (result.isFound()) {
        ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult retVal =
            new ValidateCodeResult(true, "Found code", result.getCodeDisplay());
        return retVal;
      }
    }

    //		if (valueSetIds.isEmpty()) {
    //			if (haveIdentifierParam) {
    //				myValidationSupport.expandValueSet(getContext(), include);
    //				if (myValidationSupport.isCodeSystemSupported(getContext(),
    // theValueSetIdentifier.getValue())) {
    //					String system = toStringOrNull(theSystem);
    //					String code = toStringOrNull(theCode);
    //					String display = toStringOrNull(theDisplay);
    //					CodeValidationResult result = myValidationSupport.validateCode(getContext(), system,
    // code, display);
    //					if (result != null) {
    //						if (theDisplay != null && isNotBlank(theDisplay.getValue()) &&
    // isNotBlank(result.getDisplay())) {
    //							if (!theDisplay.getValue().equals(result.getDisplay())) {
    //								return new ValidateCodeResult(false, "Display for code does not match",
    // result.getDisplay());
    //							}
    //						}
    //						return new ValidateCodeResult(true, "Code validates", result.getDisplay());
    //					}
    //				}
    //			}
    //		}

    for (IIdType nextId : valueSetIds) {
      ValueSet expansion = expand(nextId, null, theRequestDetails);
      List<ValueSetExpansionContainsComponent> contains = expansion.getExpansion().getContains();
      ValidateCodeResult result =
          validateCodeIsInContains(
              contains,
              toStringOrNull(theSystem),
              toStringOrNull(theCode),
              theCoding,
              theCodeableConcept);
      if (result != null) {
        if (theDisplay != null
            && isNotBlank(theDisplay.getValue())
            && isNotBlank(result.getDisplay())) {
          if (!theDisplay.getValue().equals(result.getDisplay())) {
            return new ValidateCodeResult(
                false, "Display for code does not match", result.getDisplay());
          }
        }
        return result;
      }
    }

    return new ValidateCodeResult(false, "Code not found", null);
  }