public List<Gene> getRelatedGenesByScore()
throws ApplicationException, DataStoreException, NoRelatedGenesInfoException {
options = runGeneManiaAlgorithm();
final Map<Gene, Double> scores = options.getScores();
ArrayList<Gene> relatedGenes = new ArrayList<Gene>(scores.keySet());
Collections.sort(
relatedGenes,
new Comparator<Gene>() {
public int compare(Gene gene1, Gene gene2) {
return -Double.compare(scores.get(gene1), scores.get(gene2));
}
});
return relatedGenes;
}
