private Integer createBandH5D(Band band) throws IOException {
final int w = band.getRasterWidth();
final int h = band.getRasterHeight();
long[] dims = new long[] {h, w};
int datasetID = -1;
int fileTypeID = -1;
int fileSpaceID = -1;
try {
fileTypeID = createH5TypeID(band.getDataType());
fileSpaceID = H5.H5Screate_simple(2, dims, null);
datasetID =
H5.H5Dcreate(
_fileID,
"/bands/" + band.getName(),
fileTypeID,
fileSpaceID,
HDF5Constants.H5P_DEFAULT);
try {
// @todo 1 nf/tb - MEMOPT: add min, max here
createScalarAttribute(datasetID, "raster_width", band.getRasterWidth());
createScalarAttribute(datasetID, "raster_height", band.getRasterHeight());
createScalarAttribute(datasetID, "scaling_factor", band.getScalingFactor());
createScalarAttribute(datasetID, "scaling_offset", band.getScalingOffset());
createScalarAttribute(datasetID, "log10_scaled", band.isLog10Scaled() ? "true" : "false");
createScalarAttribute(datasetID, "unit", band.getUnit());
createScalarAttribute(datasetID, "description", band.getDescription());
if (band.getSpectralBandIndex() >= 0) {
createScalarAttribute(datasetID, "spectral_band_index", band.getSpectralBandIndex() + 1);
createScalarAttribute(datasetID, "solar_flux", band.getSolarFlux());
createScalarAttribute(datasetID, "bandwidth", band.getSpectralBandwidth());
createScalarAttribute(datasetID, "wavelength", band.getSpectralWavelength());
}
if (band.getFlagCoding() != null) {
createScalarAttribute(datasetID, "flag_coding", band.getFlagCoding().getName());
}
createScalarAttribute(datasetID, "CLASS", "IMAGE");
createScalarAttribute(datasetID, "IMAGE_VERSION", 1.2F);
if (band.isStxSet()) {
final Stx stx = band.getStx();
createScalarAttribute(datasetID, "min_sample", stx.getMinimum());
createScalarAttribute(datasetID, "max_sample", stx.getMaximum());
}
if (band.getImageInfo() != null) {
final ColorPaletteDef paletteDef = band.getImageInfo().getColorPaletteDef();
float[] minmax =
new float[] {
(float) paletteDef.getMinDisplaySample(), (float) paletteDef.getMaxDisplaySample()
};
createArrayAttribute(datasetID, "IMAGE_MINMAXRANGE", minmax);
}
} catch (IOException e) {
/* ignore IOException because these attributes are not very essential... */
Debug.trace("failed to create attribute: " + e.getMessage());
}
} catch (HDF5Exception e) {
closeH5D(datasetID);
throw new ProductIOException(createErrorMessage(e));
} finally {
closeH5S(fileSpaceID);
closeH5T(fileTypeID);
}
return datasetID;
}
// Processes a single band MERIS data using the MERIS ADS.
private void processMerisBandWithADS(Band band, ProgressMonitor pm) throws IOException {
// load appropriate Sensor coefficientFile and init algorithm
// ----------------------------------------------------------
if (!loadBandCoefficients(band)) {
_logger.severe(
SmacConstants.LOG_MSG_COEFF_NOT_FOUND_1
+ band.getName()
+ SmacConstants.LOG_MSG_COEFF_NOT_FOUND_2); /*I18N*/
setCurrentStatus(ProcessorConstants.STATUS_FAILED);
return;
}
_logger.info(
SmacConstants.LOG_MSG_GENERATING_PIXEL_1
+ band.getName()
+ SmacConstants.LOG_MSG_GENERATING_PIXEL_2); /*I18N*/
// initialize vectors and other data
// ---------------------------------
int width = band.getSceneRasterWidth();
int height = band.getSceneRasterHeight();
Band outBand = _outputProduct.getBand(convertMerisBandName(band));
float[] sza = new float[width];
float[] saa = new float[width];
float[] vza = new float[width];
float[] vaa = new float[width];
float[] taup550 = new float[width];
float[] uh2o = new float[width];
float[] uo3 = new float[width];
float[] press = new float[width];
float[] elev = new float[width];
boolean[] process = new boolean[width];
float[] toa = new float[width];
float[] toa_corr = new float[width];
// set up vector - this parameter is constant for the request
for (int x = 0; x < width; x++) {
taup550[x] = _tau_aero_550;
process[x] = true;
}
// progress bar init
// -----------------
pm.beginTask(
SmacConstants.LOG_MSG_GENERATING_PIXEL_1
+ band.getName()
+ SmacConstants.LOG_MSG_GENERATING_PIXEL_2,
height * 10);
try {
// loop over all scanlines
// -----------------------
for (int y = 0; y < height; y++) {
// read scanline
// -------------
band.readPixels(0, y, width, 1, toa, SubProgressMonitor.create(pm, 1));
_szaBand.readPixels(0, y, width, 1, sza, SubProgressMonitor.create(pm, 1));
_saaBand.readPixels(0, y, width, 1, saa, SubProgressMonitor.create(pm, 1));
_vzaBand.readPixels(0, y, width, 1, vza, SubProgressMonitor.create(pm, 1));
_vaaBand.readPixels(0, y, width, 1, vaa, SubProgressMonitor.create(pm, 1));
_wvBand.readPixels(0, y, width, 1, uh2o, SubProgressMonitor.create(pm, 1));
_o3Band.readPixels(0, y, width, 1, uo3, SubProgressMonitor.create(pm, 1));
_pressBand.readPixels(0, y, width, 1, press, SubProgressMonitor.create(pm, 1));
_elevBand.readPixels(0, y, width, 1, elev, SubProgressMonitor.create(pm, 1));
// scale radiance to reflectance
// -------------------------------
toa = RsMathUtils.radianceToReflectance(toa, sza, band.getSolarFlux(), toa);
// correct pressure due to elevation
// ---------------------------------
press = RsMathUtils.simpleBarometric(press, elev, press);
// scale DU to cm * atm
// ----------------------
uo3 = dobsonToCmAtm(uo3);
// scale relative humidity to g/cm^2
// -----------------------------------
uh2o = relativeHumidityTogcm2(uh2o);
// forEachPixel bitmask
// ----------------
if (_bitMaskTerm != null) {
_inputProduct.readBitmask(0, y, width, 1, _bitMaskTerm, process, ProgressMonitor.NULL);
}
// process scanline
// ----------------
toa_corr =
_algorithm.run(
sza,
saa,
vza,
vaa,
taup550,
uh2o,
uo3,
press,
process,
_invalidPixel,
toa,
toa_corr);
// write scanline
// --------------
outBand.writePixels(0, y, width, 1, toa_corr, ProgressMonitor.NULL);
// update progressbar
// ------------------
pm.worked(1);
if (pm.isCanceled()) {
_logger.warning(ProcessorConstants.LOG_MSG_PROC_CANCELED);
setCurrentStatus(ProcessorConstants.STATUS_ABORTED);
return;
}
}
} finally {
pm.done();
}
_logger.info(ProcessorConstants.LOG_MSG_PROC_SUCCESS);
}
protected void addBandsToProduct(Product product) {
Debug.assertNotNull(getSourceProduct());
Debug.assertNotNull(product);
for (int i = 0; i < getSourceProduct().getNumBands(); i++) {
Band sourceBand = getSourceProduct().getBandAt(i);
String bandName = sourceBand.getName();
if (isNodeAccepted(bandName)) {
Band destBand;
boolean treatVirtualBandsAsRealBands = false;
if (getSubsetDef() != null && getSubsetDef().getTreatVirtualBandsAsRealBands()) {
treatVirtualBandsAsRealBands = true;
}
// @todo 1 se/se - extract copy of a band or virtual band to create deep clone of band and
// virtual band
if (!treatVirtualBandsAsRealBands && sourceBand instanceof VirtualBand) {
VirtualBand virtualSource = (VirtualBand) sourceBand;
destBand =
new VirtualBand(
bandName,
sourceBand.getDataType(),
getSceneRasterWidth(),
getSceneRasterHeight(),
virtualSource.getExpression());
} else {
destBand =
new Band(
bandName,
sourceBand.getDataType(),
getSceneRasterWidth(),
getSceneRasterHeight());
}
if (sourceBand.getUnit() != null) {
destBand.setUnit(sourceBand.getUnit());
}
if (sourceBand.getDescription() != null) {
destBand.setDescription(sourceBand.getDescription());
}
destBand.setScalingFactor(sourceBand.getScalingFactor());
destBand.setScalingOffset(sourceBand.getScalingOffset());
destBand.setLog10Scaled(sourceBand.isLog10Scaled());
destBand.setSpectralBandIndex(sourceBand.getSpectralBandIndex());
destBand.setSpectralWavelength(sourceBand.getSpectralWavelength());
destBand.setSpectralBandwidth(sourceBand.getSpectralBandwidth());
destBand.setSolarFlux(sourceBand.getSolarFlux());
if (sourceBand.isNoDataValueSet()) {
destBand.setNoDataValue(sourceBand.getNoDataValue());
}
destBand.setNoDataValueUsed(sourceBand.isNoDataValueUsed());
destBand.setValidPixelExpression(sourceBand.getValidPixelExpression());
FlagCoding sourceFlagCoding = sourceBand.getFlagCoding();
IndexCoding sourceIndexCoding = sourceBand.getIndexCoding();
if (sourceFlagCoding != null) {
String flagCodingName = sourceFlagCoding.getName();
FlagCoding destFlagCoding = product.getFlagCodingGroup().get(flagCodingName);
Debug.assertNotNull(
destFlagCoding); // should not happen because flag codings should be already in
// product
destBand.setSampleCoding(destFlagCoding);
} else if (sourceIndexCoding != null) {
String indexCodingName = sourceIndexCoding.getName();
IndexCoding destIndexCoding = product.getIndexCodingGroup().get(indexCodingName);
Debug.assertNotNull(
destIndexCoding); // should not happen because index codings should be already in
// product
destBand.setSampleCoding(destIndexCoding);
} else {
destBand.setSampleCoding(null);
}
if (isFullScene(getSubsetDef()) && sourceBand.isStxSet()) {
copyStx(sourceBand, destBand);
}
product.addBand(destBand);
bandMap.put(destBand, sourceBand);
}
}
for (final Map.Entry<Band, RasterDataNode> entry : bandMap.entrySet()) {
copyImageInfo(entry.getValue(), entry.getKey());
}
}
// Processes a single spectralBand of MERIS data.
private void processMerisBand(Band spectralBand, ProgressMonitor pm) throws IOException {
// load appropriate Sensor coefficientFile and init algorithm
// ----------------------------------------------------------
if (!loadBandCoefficients(spectralBand)) {
_logger.severe(
SmacConstants.LOG_MSG_COEFF_NOT_FOUND_1
+ spectralBand.getName()
+ SmacConstants.LOG_MSG_COEFF_NOT_FOUND_2);
setCurrentStatus(ProcessorConstants.STATUS_FAILED);
return;
}
_logger.info(
SmacConstants.LOG_MSG_GENERATING_PIXEL_1
+ spectralBand.getName()
+ SmacConstants.LOG_MSG_GENERATING_PIXEL_2); /*I18N*/
// initialize vectors and other data
int n;
int width = spectralBand.getSceneRasterWidth();
int height = spectralBand.getSceneRasterHeight();
Band outBand = _outputProduct.getBand(convertMerisBandName(spectralBand));
float[] sza = new float[width];
float[] saa = new float[width];
float[] vza = new float[width];
float[] vaa = new float[width];
float[] taup550 = new float[width];
float[] uh2o = new float[width];
float[] uo3 = new float[width];
float[] press = new float[width];
boolean[] process = new boolean[width];
float[] toa = new float[width];
float[] toa_corr = new float[width];
for (n = 0; n < width; n++) {
taup550[n] = _tau_aero_550;
uh2o[n] = _u_h2o;
uo3[n] = _u_o3;
press[n] = _surf_press;
process[n] = true;
}
// progress init
pm.beginTask(
SmacConstants.LOG_MSG_GENERATING_PIXEL_1
+ spectralBand.getName()
+ SmacConstants.LOG_MSG_GENERATING_PIXEL_2,
height * 6);
try {
// loop over all scanlines
for (int y = 0; y < spectralBand.getSceneRasterHeight(); y++) {
// read scanline
spectralBand.readPixels(0, y, width, 1, toa, SubProgressMonitor.create(pm, 1));
_szaBand.readPixels(0, y, width, 1, sza, SubProgressMonitor.create(pm, 1));
_saaBand.readPixels(0, y, width, 1, saa, SubProgressMonitor.create(pm, 1));
_vzaBand.readPixels(0, y, width, 1, vza, SubProgressMonitor.create(pm, 1));
_vaaBand.readPixels(0, y, width, 1, vaa, SubProgressMonitor.create(pm, 1));
// scale radiances to reflectances
toa = RsMathUtils.radianceToReflectance(toa, sza, spectralBand.getSolarFlux(), toa);
// forEachPixel bitmask
if (_bitMaskTerm != null) {
_inputProduct.readBitmask(0, y, width, 1, _bitMaskTerm, process, ProgressMonitor.NULL);
}
// process scanline
toa_corr =
_algorithm.run(
sza,
saa,
vza,
vaa,
taup550,
uh2o,
uo3,
press,
process,
_invalidPixel,
toa,
toa_corr);
// write scanline
outBand.writePixels(0, y, width, 1, toa_corr, ProgressMonitor.NULL);
// update progressbar
pm.worked(1);
if (pm.isCanceled()) {
_logger.warning(ProcessorConstants.LOG_MSG_PROC_CANCELED);
setCurrentStatus(ProcessorConstants.STATUS_ABORTED);
return;
}
}
} finally {
pm.done();
}
_logger.info(ProcessorConstants.LOG_MSG_PROC_SUCCESS);
}