private DicomObject toSCN(DicomObject ian) {
DicomObject scn = new BasicDicomObject();
scn.putString(Tag.PatientID, VR.LO, ian.getString(Tag.PatientID));
scn.putString(Tag.PatientName, VR.PN, ian.getString(Tag.PatientName));
scn.putString(Tag.StudyID, VR.SH, ian.getString(Tag.StudyID));
scn.putString(Tag.StudyInstanceUID, VR.UI, ian.getString(Tag.StudyInstanceUID));
DicomElement ianSeriesSeq = ian.get(Tag.ReferencedSeriesSequence);
DicomElement scnSeriesSeq = scn.putSequence(Tag.ReferencedSeriesSequence);
DicomObject ianSeriesItem, scnSeriesItem, scnSOPItem;
DicomElement ianSOPSeq, scnSOPSeq;
for (int i = 0, n = ianSeriesSeq.countItems(); i < n; ++i) {
ianSeriesItem = ianSeriesSeq.getDicomObject(i);
scnSeriesItem = new BasicDicomObject();
scnSeriesItem.putString(
Tag.SeriesInstanceUID, VR.UI, ianSeriesItem.getString(Tag.SeriesInstanceUID));
scnSeriesSeq.addDicomObject(scnSeriesItem);
ianSOPSeq = ianSeriesItem.get(Tag.ReferencedSOPSequence);
scnSOPSeq = scnSeriesItem.putSequence(Tag.ReferencedImageSequence);
for (int j = 0, m = ianSOPSeq.countItems(); j < m; ++j) {
scnSOPItem = new BasicDicomObject();
ianSOPSeq.getDicomObject(j).exclude(INSTANCE_AVAILABILITY).copyTo(scnSOPItem);
scnSOPSeq.addDicomObject(scnSOPItem);
}
}
return scn;
}
private void insertDicomTags(
int dcmobject_id, DicomObject obj, Integer parentId, PreparedStatement stmt)
throws Exception {
for (Iterator<DicomElement> it = obj.iterator(); it.hasNext(); ) {
DicomElement e = it.next();
StringBuffer sb = new StringBuffer();
try {
String[] values = e.getStrings(obj.getSpecificCharacterSet(), false);
sb.append(values[0].replaceAll("\0", ""));
int i;
for (i = 1; i < values.length; i++) {
sb.append("/").append(values[i].replaceAll("\0", ""));
}
} catch (Exception ee) {
try {
sb.append(e.getString(obj.getSpecificCharacterSet(), false));
} catch (Exception e2) {
}
}
stmt.setInt(1, dcmobject_id);
stmt.setString(2, DicomHeader.toTagString(e.tag()));
stmt.setString(3, e.vr().toString());
// only the first 150 chars are saved if the tag-value is longer
if (sb.length() > 150) {
stmt.setString(
4, sb.toString().substring(0, 150).concat("*** end of tag-value not applicable ***"));
} else {
stmt.setString(4, sb.toString());
}
stmt.setInt(5, itemOrder);
if (parentId == null) {
stmt.setNull(6, Types.INTEGER);
} else {
stmt.setInt(6, parentId);
}
stmt.addBatch();
// System.out.println( stmt );
itemOrder++;
if (e.countItems() > 0) {
if (e.hasDicomObjects()) {
for (int i = 0; i < e.countItems(); i++) {
insertDicomTags(dcmobject_id, e.getDicomObject(i), itemOrder - 1, stmt);
}
}
}
}
}
private DicomObject mkStgCmtResult(Association as, DicomObject rqdata) {
DicomObject result = new BasicDicomObject();
result.putString(Tag.TransactionUID, VR.UI, rqdata.getString(Tag.TransactionUID));
DicomElement rqsq = rqdata.get(Tag.ReferencedSOPSequence);
DicomElement resultsq = result.putSequence(Tag.ReferencedSOPSequence);
if (stgcmtRetrieveAET != null) {
result.putString(Tag.RetrieveAETitle, VR.AE, stgcmtRetrieveAET);
}
DicomElement failedsq = null;
File dir = getDir(as);
for (int i = 0, n = rqsq.countItems(); i < n; i++) {
DicomObject rqItem = rqsq.getDicomObject(i);
String uid = rqItem.getString(Tag.ReferencedSOPInstanceUID);
DicomObject resultItem = new BasicDicomObject();
rqItem.copyTo(resultItem);
if (stgcmtRetrieveAETs != null) {
resultItem.putString(Tag.RetrieveAETitle, VR.AE, stgcmtRetrieveAETs);
}
File f = new File(dir, uid);
if (f.isFile()) {
resultsq.addDicomObject(resultItem);
} else {
resultItem.putInt(Tag.FailureReason, VR.US, NO_SUCH_OBJECT_INSTANCE);
if (failedsq == null) {
failedsq = result.putSequence(Tag.FailedSOPSequence);
}
failedsq.addDicomObject(resultItem);
}
}
return result;
}