private void display() {
CyServiceRegistrarImpl register = new CyServiceRegistrarImpl(bc);
CyNetworkViewManager viewManager = register.getService(CyNetworkViewManager.class);
CyNetworkViewFactory viewFactory = register.getService(CyNetworkViewFactory.class);
CyNetworkView networkView = viewFactory.createNetworkView(network);
viewManager.addNetworkView(networkView);
VisualMappingFunctionFactory passthroughFactory =
register.getService(VisualMappingFunctionFactory.class, "(mapping.type=passthrough)");
VisualMappingFunctionFactory continuousFactory =
register.getService(VisualMappingFunctionFactory.class, "(mapping.type=continuous)");
VisualMappingManager vmManager = register.getService(VisualMappingManager.class);
VisualStyleFactory vsFactory = register.getService(VisualStyleFactory.class);
VisualStyle vs =
vsFactory.createVisualStyle(
network.getDefaultNetworkTable().getRow(network.getSUID()).get("name", String.class));
PassthroughMapping pMapping =
(PassthroughMapping)
passthroughFactory.createVisualMappingFunction(
"name", String.class, BasicVisualLexicon.NODE_LABEL);
vs.addVisualMappingFunction(pMapping);
vs.apply(networkView);
ContinuousMapping mapping =
(ContinuousMapping)
continuousFactory.createVisualMappingFunction(
"score", Double.class, BasicVisualLexicon.NODE_FILL_COLOR);
Double val1 = getMinimum(network.getDefaultNodeTable().getColumn("score"));
BoundaryRangeValues<Paint> brv1 =
new BoundaryRangeValues<Paint>(Color.GREEN, Color.GREEN, Color.GREEN);
Double val3 = getMaximum(network.getDefaultNodeTable().getColumn("score"));
BoundaryRangeValues<Paint> brv3 =
new BoundaryRangeValues<Paint>(Color.RED, Color.RED, Color.RED);
Double val2 = (val1 + val3 + val1 + val1) / 4;
BoundaryRangeValues<Paint> brv2 =
new BoundaryRangeValues<Paint>(Color.YELLOW, Color.YELLOW, Color.YELLOW);
mapping.addPoint(val1, brv1);
mapping.addPoint(val2, brv2);
mapping.addPoint(val3, brv3);
vs.addVisualMappingFunction(mapping);
vs.apply(networkView);
vmManager.addVisualStyle(vs);
vmManager.setVisualStyle(vs, networkView);
networkView.updateView();
}
private final void clearAll(
final CyNetworkView netView, final View<? extends CyIdentifiable> nodeView) {
boolean needToUpdateView = false;
final VisualStyle style = vmm.getCurrentVisualStyle();
for (VisualProperty<?> vp : vpSet) {
final boolean lock = nodeView.isDirectlyLocked(vp);
if (lock) {
nodeView.clearValueLock(vp);
needToUpdateView = true;
}
}
if (needToUpdateView) {
style.apply(netView);
netView.updateView();
}
}
@SuppressWarnings({"rawtypes", "unchecked"})
private final void parseMappings(
JsonNode mappings,
VisualStyle style,
VisualLexicon lexicon,
MappingFactoryManager factoryManager) {
for (final JsonNode mapping : mappings) {
final String type = mapping.get(MAPPING_TYPE).textValue();
final String column = mapping.get(MAPPING_COLUMN).textValue();
final String colType = mapping.get(MAPPING_COLUMN_TYPE).textValue();
final String vpName = mapping.get(MAPPING_VP).textValue();
final VisualProperty vp = getVisualProperty(vpName, lexicon);
final Class<?> columnType = MapperUtil.getColumnClass(colType);
if (vp == null || columnType == null) {
continue;
}
VisualMappingFunction newMapping = null;
if (type.equals(MAPPING_DISCRETE)) {
final VisualMappingFunctionFactory factory =
factoryManager.getFactory(DiscreteMapping.class);
newMapping =
parseDiscrete(column, columnType, vp, factory, mapping.get(MAPPING_DISCRETE_MAP));
} else if (type.equals(MAPPING_CONTINUOUS)) {
final VisualMappingFunctionFactory factory =
factoryManager.getFactory(ContinuousMapping.class);
newMapping = parseContinuous(column, columnType, vp, factory, mapping);
} else if (type.equals(MAPPING_PASSTHROUGH)) {
final VisualMappingFunctionFactory factory =
factoryManager.getFactory(PassthroughMapping.class);
newMapping = parsePassthrough(column, columnType, vp, factory);
}
if (newMapping != null) {
if (style.getVisualMappingFunction(vp) != null) {
style.removeVisualMappingFunction(vp);
}
style.addVisualMappingFunction(newMapping);
}
}
}
private void checkNetwork(final CyNetwork network) {
checkNodeEdgeCount(network, 331, 362, 0, 0);
// Non-default columns should not be immutable
assertCy2CustomColumnsAreMutable(network);
// View test
Collection<CyNetworkView> views = viewManager.getNetworkViews(network);
assertEquals(1, views.size());
final CyNetworkView view = views.iterator().next();
assertEquals(331, view.getNodeViews().size());
assertEquals(362, view.getEdgeViews().size());
// Check updated view
final VisualStyle style = vmm.getVisualStyle(view);
style.apply(view);
checkView(view);
}
@SuppressWarnings({"rawtypes", "unchecked"})
private final void parseDefaults(
final JsonNode defaults, final VisualStyle style, final VisualLexicon lexicon) {
for (final JsonNode vpNode : defaults) {
String vpName = vpNode.get(MAPPING_VP).textValue();
final VisualProperty vp = getVisualProperty(vpName, lexicon);
final JsonNode value = vpNode.get("value");
if (vp == null || value == null) {
continue;
}
Object parsedValue = null;
if (value.isTextual()) {
parsedValue = vp.parseSerializableString(value.asText());
} else {
parsedValue = vp.parseSerializableString(value.toString());
}
style.setDefaultValue(vp, parsedValue);
}
}
public void updateDependencies(final VisualStyle style, final JsonNode rootNode) {
final Set<VisualPropertyDependency<?>> deps = style.getAllVisualPropertyDependencies();
final Map<String, VisualPropertyDependency<?>> names = new HashMap<>();
for (final VisualPropertyDependency<?> dep : deps) {
names.put(dep.getIdString(), dep);
}
for (final JsonNode depNode : rootNode) {
String depId = depNode.get(VisualStyleMapper.VP_DEPENDENCY).textValue();
final VisualPropertyDependency<?> dep = names.get(depId);
if (dep == null) {
continue;
}
final JsonNode enabled = depNode.get("enabled");
if (enabled == null) {
continue;
}
boolean value = enabled.asBoolean();
dep.setDependency(value);
}
}
public void updateStyleName(
final VisualStyle style, final VisualLexicon lexicon, final JsonNode rootNode) {
final String newTitle = rootNode.get(TITLE).textValue();
style.setTitle(newTitle);
}
@SuppressWarnings("unchecked")
private void checkCurrentVisualStyle(final VisualStyle style) {
assertNotNull(style);
assertEquals("Sample3", style.getTitle());
Collection<VisualMappingFunction<?, ?>> mappings = style.getAllVisualMappingFunctions();
assertEquals(6, mappings.size());
// Test defaults
NodeShape defaultShape = style.getDefaultValue(NODE_SHAPE);
Paint nodeColor = style.getDefaultValue(NODE_FILL_COLOR);
Integer fontSize = style.getDefaultValue(NODE_LABEL_FONT_SIZE);
Integer transparency = style.getDefaultValue(NODE_TRANSPARENCY);
Double w = style.getDefaultValue(NODE_WIDTH);
Double h = style.getDefaultValue(NODE_HEIGHT);
Paint edgeLabelColor = style.getDefaultValue(EDGE_LABEL_COLOR);
assertEquals(new Color(255, 255, 204), edgeLabelColor);
assertEquals(NodeShapeVisualProperty.ROUND_RECTANGLE, defaultShape);
assertEquals(Color.WHITE, nodeColor);
assertEquals(Integer.valueOf(16), fontSize);
assertEquals(Integer.valueOf(180), transparency);
assertEquals(Double.valueOf(80), w);
assertEquals(Double.valueOf(30), h);
// Check each mapping
VisualMappingFunction<?, String> nodeLabelMapping = style.getVisualMappingFunction(NODE_LABEL);
VisualMappingFunction<?, String> edgeLabelMapping = style.getVisualMappingFunction(EDGE_LABEL);
assertTrue(nodeLabelMapping instanceof PassthroughMapping);
assertTrue(edgeLabelMapping instanceof PassthroughMapping);
assertEquals(CyNetwork.NAME, nodeLabelMapping.getMappingColumnName());
assertEquals(CyEdge.INTERACTION, edgeLabelMapping.getMappingColumnName());
assertEquals(String.class, nodeLabelMapping.getMappingColumnType());
assertEquals(String.class, edgeLabelMapping.getMappingColumnType());
// Node Color mapping
VisualMappingFunction<?, Paint> nodeColorMapping =
style.getVisualMappingFunction(NODE_FILL_COLOR);
assertTrue(nodeColorMapping instanceof ContinuousMapping);
assertEquals("gal4RGexp", nodeColorMapping.getMappingColumnName());
assertEquals(Number.class, nodeColorMapping.getMappingColumnType());
// Edge Color mapping
VisualMappingFunction<?, Paint> edgeColorMapping =
style.getVisualMappingFunction(EDGE_STROKE_UNSELECTED_PAINT);
assertTrue(edgeColorMapping instanceof DiscreteMapping);
assertEquals(CyEdge.INTERACTION, edgeColorMapping.getMappingColumnName());
assertEquals(String.class, edgeColorMapping.getMappingColumnType());
DiscreteMapping<String, Paint> disc1 = (DiscreteMapping<String, Paint>) edgeColorMapping;
assertEquals(Color.WHITE, disc1.getMapValue("pp"));
assertEquals(new Color(102, 255, 255), disc1.getMapValue("pd"));
assertEquals(null, disc1.getMapValue("this is an invalid value"));
// Numbers as Tooltip
VisualMappingFunction<?, String> nodeTooltipMapping =
style.getVisualMappingFunction(NODE_TOOLTIP);
assertTrue(nodeTooltipMapping instanceof PassthroughMapping);
assertEquals("gal4RGexp", nodeTooltipMapping.getMappingColumnName());
// Cy2 doesn't write the "controllerType" property for PassThroughMappings,
// so it's always created as String (it shouldn't cause any issues)
assertEquals(String.class, nodeTooltipMapping.getMappingColumnType());
VisualMappingFunction<?, LineType> edgeLineStyleMapping =
style.getVisualMappingFunction(EDGE_LINE_TYPE);
assertTrue(edgeLineStyleMapping instanceof DiscreteMapping);
assertEquals(CyEdge.INTERACTION, edgeLineStyleMapping.getMappingColumnName());
assertEquals(String.class, edgeLineStyleMapping.getMappingColumnType());
DiscreteMapping<String, LineType> disc2 =
(DiscreteMapping<String, LineType>) edgeLineStyleMapping;
assertEquals(LineTypeVisualProperty.SOLID, disc2.getMapValue("pp"));
assertEquals(LineTypeVisualProperty.LONG_DASH, disc2.getMapValue("pd"));
assertEquals(null, disc2.getMapValue("this is an invalid value"));
}