/**
* Checks if the controlled Interaction contains a controller as a participant. This constraint
* filters out such cases.
*
* @param match current pattern match
* @param ind mapped indices
* @return true if participants of teh controlled Interactions not also a controller of the
* Control.
*/
@Override
public boolean satisfies(Match match, int... ind) {
Control ctrl = (Control) match.get(ind[0]);
for (Process process : ctrl.getControlled()) {
if (process instanceof Interaction) {
Interaction inter = (Interaction) process;
Set<Entity> participant = inter.getParticipant();
for (Controller controller : ctrl.getController()) {
if (participant.contains(controller)) return false;
}
}
}
return true;
}
public List<String[]> getInspectable() {
List<String[]> list = new ArrayList<String[]>();
BioPAXNode.addNamesAndTypeAndID(list, cont);
for (Evidence ev : cont.getEvidence()) {
list.add(new String[] {"Evidence", ev.toString()});
}
if (!cont.getInteractionType().isEmpty()) {
String s = BioPAXNode.formatInString(cont.getInteractionType());
list.add(new String[] {"Interaction Type", s});
}
if (cont.getControlType() != null) {
list.add(new String[] {"Control Type", cont.getControlType().toString()});
}
BioPAXNode.addDataSourceAndXrefAndComments(list, cont);
return list;
}
public NonModulatedEffector(
NodeModel source, NodeModel target, Control cont, Process controlled) {
super(source, target);
assert source instanceof Actor || source instanceof ChbComplex || source instanceof ChbPathway;
assert target instanceof ChbConversion
|| target instanceof ChbTempReac
|| target instanceof ChbControl
|| target instanceof Hub;
this.cont = cont;
this.controlled = controlled;
this.sign = ChbControl.isActivation(cont) ? Edge.POSITIVE : Edge.NEGATIVE;
setColor(isPositive() ? ChbControl.EDGE_COLOR_ACTIVATE : ChbControl.EDGE_COLOR_INHIBIT);
setArrow(
cont instanceof Catalysis
? "Catalysis"
: cont.getControlType() == null
? "Modulation"
: this.isPositive() ? "Stimulation" : "Inhibition");
}