public void actionPerformed(ActionEvent e) {
try {
String scannedDestination = ((JTextField) e.getSource()).getText().toUpperCase();
validateDestinationScan(scannedDestination);
DefaultListModel listModel = (DefaultListModel) destinationsList.getModel();
int lastPosition = listModel.getSize();
int seedsCount = 0;
// todo: do we have to worry about more trays than required..?
for (int i = 0; i < seedPlates.length; i++) {
if (seedPlates[i].getSeedPlateBarcode() != null
&& SCANNED.equals(seedPlates[i].getStatus())
&& !isContainedInList(seedPlates[i].getSeedPlateBarcode(), failedPlatesList)) {
seedsCount++;
}
}
if (lastPosition >= seedsCount) {
throw new ChippingManagerException(DESTINATIONS_LIMIT_EXCEEDED);
}
addDestination(scannedDestination);
} catch (Throwable cmException) {
logger.error("Unable to scan destination ", cmException);
JOptionPane.showMessageDialog(
new JFrame(),
cmException.getMessage(),
TITLE_CHIPPING_MANAGER,
JOptionPane.WARNING_MESSAGE);
}
scanDestination.setText(BLANK);
}
public void actionPerformed(ActionEvent e) {
try {
validateUnloadPlatesDialog();
unloadPlates();
} catch (Throwable cmException) {
logger.error("error to unload to multiple destinations", cmException);
JOptionPane.showMessageDialog(
new JFrame(),
cmException.getMessage(),
TITLE_CHIPPING_MANAGER,
JOptionPane.WARNING_MESSAGE);
}
}
public static void main(String[] argv) throws InterruptedException {
// Arguments:
// 1st = Mode
// 2nd = Parent Path -- (Parent path must have children /data and /output
System.out.println("+----------------------------------+");
System.out.println("| Running Athena Pallas Processor |");
System.out.println("| 9/12/12 |");
System.out.println("+----------------------------------+");
Athena_Server_Obj = new ATHENA_Server_Local();
BasicConfigurator.configure();
Logger.getRootLogger().setLevel(Level.WARN);
// Get and verify parameters
if (argv.length < 2) {
System.out.println("Not enough parameters.");
System.out.println("Expected 2 parameters: 1st is MODE, 2nd is path to working directory.");
System.out.println("Exiting.");
System.exit(0);
}
String mode = argv[0];
String parentPath = argv[1];
File inFilePath = new File(parentPath + "astronautdata/");
File outFilePath = new File(parentPath + "output/");
File kbFilePath = new File(parentPath + "kbs/");
if (mode.equals("")) {
System.out.println("Parameter 1 is empty. Should be RUNMODE (e.g. 'HTN'). Exiting");
System.exit(0);
}
if (inFilePath.isDirectory() == false) {
System.out.println(inFilePath.getName() + " directory is missing. Exiting");
System.exit(0);
}
if (outFilePath.isDirectory() == false) {
System.out.println(outFilePath.getName() + " directory is missing. Exiting");
System.exit(0);
}
if (kbFilePath.isDirectory() == false) {
System.out.println(kbFilePath.getName() + " directory is missing. Exiting");
System.exit(0);
}
String kbID = "";
TStringList IgnoredFileNames = new TStringList();
// Main Loop
while (mainLoopRunning) {
if (Verbose == true) {
// System.out.println("New Loop");
}
fileProcessed = false;
if (Verbose == true) {
// System.out.println("Ignoring #" + IgnoredFileNames.Count() + " files.");
}
// (re)load if needed
if (loadKB == true) {
String[] kbInfo = Athena_Server_Obj.loadKBInfo(mode, parentPath);
String kbFilenamePath = kbInfo[0];
kbID = kbInfo[1];
Athena_Server_Obj.loadKB(kbFilenamePath, kbID);
loadKB = false;
}
File[] listOfFiles = inFilePath.listFiles();
// for (File child : inFilePath.listFiles()) {
for (int i = 0; i < listOfFiles.length; i++) {
File child = listOfFiles[i];
if (".".equals(child.getName()) || "..".equals(child.getName())) {
continue;
}
if (child.getName().toUpperCase().equals(mode + "-CMD.TXT")) {
try {
handleCommands(child.getPath(), outFilePath, mode);
// fileProcessed = true;
if (child.delete() == false) {
System.out.println("Unable to delete: " + child.getPath());
Thread.sleep(1000);
}
} catch (IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
// continue;
}
if (IgnoredFileNames.IndexOf(child.getName()) > -1) {
// if (Verbose == true) {System.out.print("~");}
continue;
}
if (Verbose == true) {
System.out.println("Considering file: [" + child.getName() + "]");
}
String[] namePieces = child.getName().split("_");
// (should only open filenames with format of <MODE>_<DFN>.xml)
if (Verbose == true) {
System.out.println("File Name Is: " + child.getName());
}
String fileExt = GetFileExtension(child.getName());
if (Verbose == true) {
System.out.println("File Ext Is: " + fileExt);
}
// At times, there seems to be a race condition, where this java process
// tries to load in the file before the mump process is done writting
// So I have modified the mumps process to that it outputs TWO files.
// 1st the <MODE>_<DFN>.xml file
// 2nd, after finished with above, it outputs <MODE>_<DFN>_READY.TXT
// So the 2nd file must exist before opening the <MODE>_<DFN>.xml
// The 2nd file need not be opened or processed. Just the fact that
// it exists on in the directory is signal that it is OK to process.
if (fileExt.equals("xml") == false) {
if (Verbose == true) {
System.out.println("Skipping file due to wrong extension.");
}
IgnoredFileNames.Add(child.getName());
continue;
}
if (((namePieces.length > 1) && (namePieces[0].equals(mode))) == false) {
if (Verbose == true) {
System.out.println("Skipping file due to wrong mode.");
}
IgnoredFileNames.Add(child.getName());
continue;
}
Boolean finishFileExists = finishFileExist(child.getPath());
if (Verbose == true) {
System.out.println("Ready File Exists?: " + finishFileExists);
}
// NOTE: after processing the <MODE>_<DFN>.xml, both files should be deleted
// NOTE: in java, one can't use '=' to compare strings -- that just compares a pointer to
// the string. Must use ".equals()"
if (finishFileExists == true) {
System.out.println("Found File to Process: [" + child.getName() + "]");
fileProcessed = true;
String patientID = namePieces[1];
patientID = patientID.split("\\.")[0];
File outFileName =
new File(outFilePath.getPath() + "/" + mode + "_" + patientID + ".xml");
String htmlFile = outFilePath.getPath() + "/" + mode + "_" + patientID + ".html";
System.out.println("SENDING TO: [" + outFileName.getPath() + "]");
String readyFileName;
readyFileName = outFileName.getPath();
try {
processFile(patientID, child, outFileName, kbID, htmlFile);
} catch (Throwable t) {
try {
FileWriter fwrite = new FileWriter(outFileName);
fwrite.write(
"-1^CDSS/Clinical Decision Support Engine(Athena) Error. " + t.getMessage());
fwrite.flush();
fwrite.close();
} catch (IOException e3) {
System.out.println("Could not create error message");
}
System.out.println("Error Processing Recommendation: " + t.getMessage());
// return;
}
System.out.println("Ready.TXT File Name Is: " + readyFileName); // Remove
File readyFile = new File(readyFileName.replace(".xml", "_READY.TXT"));
try {
readyFile.createNewFile();
FileWriter fstream = new FileWriter(readyFile);
BufferedWriter out = new BufferedWriter(fstream);
out.write("DONE");
out.close();
System.out.println("****SUCCESS****" + readyFile.getPath());
} catch (java.io.IOException e0) {
System.out.println("Error creating READY file");
}
if (child.delete() == false) {
System.out.println("Unable to delete: " + child.getName());
Thread.sleep(1000);
}
// Delete completed file
File f = new File(getFinishFileName(child.getPath()));
if (f.delete() == false) {
System.out.println("Unable to delete: " + f.getName());
Thread.sleep(1000);
}
}
}
if (fileProcessed == false) {
Thread.sleep(1000);
if (Verbose == true) {
System.out.print(".");
}
} else {
if (Verbose == true) {
System.out.println("Found process, so won't sleep...");
}
}
mainLoopRunning = false;
} // for loop
System.out.println("Finished with run.");
System.exit(0);
} // Main routine
public void _jspService(HttpServletRequest request, HttpServletResponse response)
throws java.io.IOException, ServletException {
PageContext pageContext = null;
HttpSession session = null;
ServletContext application = null;
ServletConfig config = null;
JspWriter out = null;
Object page = this;
JspWriter _jspx_out = null;
PageContext _jspx_page_context = null;
try {
response.setContentType("text/html");
pageContext = _jspxFactory.getPageContext(this, request, response, null, true, 8192, true);
_jspx_page_context = pageContext;
application = pageContext.getServletContext();
config = pageContext.getServletConfig();
session = pageContext.getSession();
out = pageContext.getOut();
_jspx_out = out;
out.write("\r\n\r\n");
final DisplayState theDisplayState = (DisplayState) request.getAttribute(MasterServlet.STATE);
final Frame frame = (Frame) request.getAttribute(AbstractChip.FRAME_KEY);
/*
//to be definitive NOT serializable
InputStream noser = (InputStream)session.getAttribute( "NOT_SERIALIZABLE");
if( noser==null )
{
session.setAttribute( "NOT_SERIALIZABLE", new ByteArrayInputStream( new byte[0] ));
}
*/
out.write('\r');
out.write('\n');
final AbstractItemTreeNodeChip theChip =
(AbstractItemTreeNodeChip) request.getAttribute(AbstractChip.CHIP_KEY);
out.write("\r\n<input type=\"hidden\" name=\"");
out.print(theChip.getEventID(AbstractTreeNodeChip.EDIT));
out.write("\" value=\"");
out.print(AbstractChip.FALSE);
out.write(
"\" />\r\n<table class=\"abstractItemTreeNodeChip\" cellspacing=\"0\" cellpadding=\"0\">\r\n\t<tr>\r\n\t\t<td class=\"aitncIcon\">\r\n\t\t\t<div onclick=\"document.editorForm.elements['");
out.print(theChip.getEventID(AbstractTreeNodeChip.EDIT));
out.write("'].value='");
out.print(AbstractChip.TRUE);
out.write("';setScrollAndSubmit();\">\r\n\t\t\t\t<img src=\"");
out.print(theChip.getIcon());
out.write(
"\" border=\"0\">\r\n\t\t\t</div>\r\n\t\t</td>\r\n\t\t<td class=\"aitncName\">\r\n\t\t\t<div onclick=\"document.editorForm.elements['");
out.print(theChip.getEventID(AbstractTreeNodeChip.EDIT));
out.write("'].value='");
out.print(AbstractChip.TRUE);
out.write("';setScrollAndSubmit();\">\r\n\t\t\t\t");
out.print(theChip.getName());
out.write("\r\n\t\t\t</div>\r\n\t\t</td>\r\n\t</tr>\r\n\t");
if (theChip.isExpanded()) {
for (final Iterator it = theChip.getAllChildren().iterator(); it.hasNext(); ) {
final AbstractTreeNodeChip child = (AbstractTreeNodeChip) it.next();
out.write("\r\n\t\t\t\t\t<tr>\r\n\t\t\t\t\t\t<td class=\"aitncTreeIMG\" background=\"");
out.print(it.hasNext() ? "images/vert.gif" : "");
out.write("\">\r\n\t\t\t\t\t\t\t");
if (child.hasChildren()) {
if (child.isExpanded()) {
out.write("<input type=\"hidden\" name=\"");
out.print(child.getEventID(AbstractTreeNodeChip.COLLAPSE));
out.write("\" value=\"");
out.print(AbstractChip.FALSE);
out.write("\" /><div onclick=\"document.editorForm.elements['");
out.print(child.getEventID(AbstractTreeNodeChip.COLLAPSE));
out.write("'].value='");
out.print(AbstractChip.TRUE);
out.write("';setScrollAndSubmit();\">");
if (it.hasNext()) {
out.write("<img src=\"images/minus.gif\"></td>");
} else {
out.write("<img src=\"images/minusend.gif\"></td>");
}
out.write("</div>");
} else {
out.write("<input type=\"hidden\" name=\"");
out.print(child.getEventID(AbstractTreeNodeChip.EXPAND));
out.write("\" value=\"");
out.print(AbstractChip.FALSE);
out.write("\" /><div onclick=\"document.editorForm.elements['");
out.print(child.getEventID(AbstractTreeNodeChip.EXPAND));
out.write("'].value='");
out.print(AbstractChip.TRUE);
out.write("';setScrollAndSubmit();\">");
if (it.hasNext()) {
out.write("<img src=\"images/plus.gif\"></td>");
} else {
out.write("<img src=\"images/plusend.gif\"></td>");
}
out.write("</div>");
}
} else {
if (it.hasNext()) {
out.write("<img src=\"images/horiz.gif\"></td>");
} else {
out.write("<img src=\"images/end.gif\"></td>");
}
}
out.write("\r\n\t\t\t\t\t\t</td>\r\n\t\t\t\t\t\t<td class=\"aitncContext\">");
child.render(pageContext);
out.write("</td>\r\n\t\t\t\t\t</tr>\r\n\t\t\t\t");
}
}
out.write("\r\n</table>\r\n");
} catch (Throwable t) {
if (!(t instanceof SkipPageException)) {
out = _jspx_out;
if (out != null && out.getBufferSize() != 0)
try {
out.clearBuffer();
} catch (java.io.IOException e) {
}
if (_jspx_page_context != null) _jspx_page_context.handlePageException(t);
else log(t.getMessage(), t);
}
} finally {
_jspxFactory.releasePageContext(_jspx_page_context);
}
}
