@Override
public void configure(JobConf conf) {
this.threshold = conf.getFloat(PARAM_APS_THRESHOLD, DEFAULT_THRESHOLD);
int reducerID = conf.getInt("mapred.task.partition", -1);
int max = conf.getInt(PARAM_APS_MAXKEY, 0);
int nstripes = conf.getInt(PARAM_APS_STRIPES, 1);
int spread = conf.getInt(PARAM_APS_REDUCER_PER_STRIPE, 1);
if (reducerID < 0 || max == 0) {
LOG.error("Could not find stripe ID, reverting to whole rest file loading");
LOG.debug("reducer = " + reducerID + "\t max = " + max + "\t nstripes = " + nstripes);
// open the pruned part file in the DistrubutedCache
haspruned = FileUtils.readRestFile(conf, pruned);
} else {
int stripe = GenericKey.StripePartitioner.findStripe(reducerID, spread);
int from = GenericKey.StripePartitioner.minKeyInStripe(stripe, nstripes, max);
int to = from + GenericKey.StripePartitioner.numKeysInStripe(stripe, nstripes, max);
// read from 'from' included, to 'to' excluded
LOG.info(
"Reducer "
+ reducerID
+ " loading stripe "
+ stripe
+ " of "
+ nstripes
+ " ("
+ from
+ ","
+ (to - 1)
+ ")");
haspruned = FileUtils.readRestFile(conf, pruned, from, to);
}
if (!haspruned) LOG.warn("No pruned file provided in DistributedCache");
else LOG.info("Read " + pruned.size() + " entries from pruned file");
}
@Override
public void configure(JobConf conf) {
threshold = conf.getFloat(PARAM_APS_THRESHOLD, DEFAULT_THRESHOLD);
mos = new MultipleOutputs(conf);
// open the maxWeight_i file in the DistributedCache
boolean succeded = FileUtils.readMaxWiFile(conf, maxWi);
if (!succeded) throw new AssertionError("Could not read maxWi file");
}
public void configure(JobConf job) {
this.jobConf = job;
urlNormalizers = new URLNormalizers(job, URLNormalizers.SCOPE_INJECT);
interval = jobConf.getInt("db.fetch.interval.default", 2592000);
filters = new URLFilters(jobConf);
scfilters = new ScoringFilters(jobConf);
scoreInjected = jobConf.getFloat("db.score.injected", 1.0f);
curTime = job.getLong("injector.current.time", System.currentTimeMillis());
}
@Override
public void configure(JobConf conf) {
this.threshold = conf.getFloat(PARAM_APS_THRESHOLD, DEFAULT_THRESHOLD);
}
private RawKeyValueIterator finalMerge(
JobConf job,
FileSystem fs,
List<InMemoryMapOutput<K, V>> inMemoryMapOutputs,
List<CompressAwarePath> onDiskMapOutputs)
throws IOException {
LOG.info(
"finalMerge called with "
+ inMemoryMapOutputs.size()
+ " in-memory map-outputs and "
+ onDiskMapOutputs.size()
+ " on-disk map-outputs");
final float maxRedPer = job.getFloat(MRJobConfig.REDUCE_INPUT_BUFFER_PERCENT, 0f);
if (maxRedPer > 1.0 || maxRedPer < 0.0) {
throw new IOException(MRJobConfig.REDUCE_INPUT_BUFFER_PERCENT + maxRedPer);
}
int maxInMemReduce =
(int) Math.min(Runtime.getRuntime().maxMemory() * maxRedPer, Integer.MAX_VALUE);
// merge config params
Class<K> keyClass = (Class<K>) job.getMapOutputKeyClass();
Class<V> valueClass = (Class<V>) job.getMapOutputValueClass();
boolean keepInputs = job.getKeepFailedTaskFiles();
final Path tmpDir = new Path(reduceId.toString());
final RawComparator<K> comparator = (RawComparator<K>) job.getOutputKeyComparator();
// segments required to vacate memory
List<Segment<K, V>> memDiskSegments = new ArrayList<Segment<K, V>>();
long inMemToDiskBytes = 0;
boolean mergePhaseFinished = false;
if (inMemoryMapOutputs.size() > 0) {
TaskID mapId = inMemoryMapOutputs.get(0).getMapId().getTaskID();
inMemToDiskBytes =
createInMemorySegments(inMemoryMapOutputs, memDiskSegments, maxInMemReduce);
final int numMemDiskSegments = memDiskSegments.size();
if (numMemDiskSegments > 0 && ioSortFactor > onDiskMapOutputs.size()) {
// If we reach here, it implies that we have less than io.sort.factor
// disk segments and this will be incremented by 1 (result of the
// memory segments merge). Since this total would still be
// <= io.sort.factor, we will not do any more intermediate merges,
// the merge of all these disk segments would be directly fed to the
// reduce method
mergePhaseFinished = true;
// must spill to disk, but can't retain in-mem for intermediate merge
final Path outputPath =
mapOutputFile
.getInputFileForWrite(mapId, inMemToDiskBytes)
.suffix(Task.MERGED_OUTPUT_PREFIX);
final RawKeyValueIterator rIter =
Merger.merge(
job,
fs,
keyClass,
valueClass,
memDiskSegments,
numMemDiskSegments,
tmpDir,
comparator,
reporter,
spilledRecordsCounter,
null,
mergePhase);
Writer<K, V> writer =
new Writer<K, V>(job, fs, outputPath, keyClass, valueClass, codec, null);
try {
Merger.writeFile(rIter, writer, reporter, job);
writer.close();
onDiskMapOutputs.add(
new CompressAwarePath(
outputPath, writer.getRawLength(), writer.getCompressedLength()));
writer = null;
// add to list of final disk outputs.
} catch (IOException e) {
if (null != outputPath) {
try {
fs.delete(outputPath, true);
} catch (IOException ie) {
// NOTHING
}
}
throw e;
} finally {
if (null != writer) {
writer.close();
}
}
LOG.info(
"Merged "
+ numMemDiskSegments
+ " segments, "
+ inMemToDiskBytes
+ " bytes to disk to satisfy "
+ "reduce memory limit");
inMemToDiskBytes = 0;
memDiskSegments.clear();
} else if (inMemToDiskBytes != 0) {
LOG.info(
"Keeping "
+ numMemDiskSegments
+ " segments, "
+ inMemToDiskBytes
+ " bytes in memory for "
+ "intermediate, on-disk merge");
}
}
// segments on disk
List<Segment<K, V>> diskSegments = new ArrayList<Segment<K, V>>();
long onDiskBytes = inMemToDiskBytes;
long rawBytes = inMemToDiskBytes;
CompressAwarePath[] onDisk =
onDiskMapOutputs.toArray(new CompressAwarePath[onDiskMapOutputs.size()]);
for (CompressAwarePath file : onDisk) {
long fileLength = fs.getFileStatus(file).getLen();
onDiskBytes += fileLength;
rawBytes += (file.getRawDataLength() > 0) ? file.getRawDataLength() : fileLength;
LOG.debug("Disk file: " + file + " Length is " + fileLength);
diskSegments.add(
new Segment<K, V>(
job,
fs,
file,
codec,
keepInputs,
(file.toString().endsWith(Task.MERGED_OUTPUT_PREFIX)
? null
: mergedMapOutputsCounter),
file.getRawDataLength()));
}
LOG.info("Merging " + onDisk.length + " files, " + onDiskBytes + " bytes from disk");
Collections.sort(
diskSegments,
new Comparator<Segment<K, V>>() {
public int compare(Segment<K, V> o1, Segment<K, V> o2) {
if (o1.getLength() == o2.getLength()) {
return 0;
}
return o1.getLength() < o2.getLength() ? -1 : 1;
}
});
// build final list of segments from merged backed by disk + in-mem
List<Segment<K, V>> finalSegments = new ArrayList<Segment<K, V>>();
long inMemBytes = createInMemorySegments(inMemoryMapOutputs, finalSegments, 0);
LOG.info(
"Merging "
+ finalSegments.size()
+ " segments, "
+ inMemBytes
+ " bytes from memory into reduce");
if (0 != onDiskBytes) {
final int numInMemSegments = memDiskSegments.size();
diskSegments.addAll(0, memDiskSegments);
memDiskSegments.clear();
// Pass mergePhase only if there is a going to be intermediate
// merges. See comment where mergePhaseFinished is being set
Progress thisPhase = (mergePhaseFinished) ? null : mergePhase;
RawKeyValueIterator diskMerge =
Merger.merge(
job,
fs,
keyClass,
valueClass,
codec,
diskSegments,
ioSortFactor,
numInMemSegments,
tmpDir,
comparator,
reporter,
false,
spilledRecordsCounter,
null,
thisPhase);
diskSegments.clear();
if (0 == finalSegments.size()) {
return diskMerge;
}
finalSegments.add(
new Segment<K, V>(new RawKVIteratorReader(diskMerge, onDiskBytes), true, rawBytes));
}
return Merger.merge(
job,
fs,
keyClass,
valueClass,
finalSegments,
finalSegments.size(),
tmpDir,
comparator,
reporter,
spilledRecordsCounter,
null,
null);
}
public MergeManagerImpl(
TaskAttemptID reduceId,
JobConf jobConf,
FileSystem localFS,
LocalDirAllocator localDirAllocator,
Reporter reporter,
CompressionCodec codec,
Class<? extends Reducer> combinerClass,
CombineOutputCollector<K, V> combineCollector,
Counters.Counter spilledRecordsCounter,
Counters.Counter reduceCombineInputCounter,
Counters.Counter mergedMapOutputsCounter,
ExceptionReporter exceptionReporter,
Progress mergePhase,
MapOutputFile mapOutputFile) {
this.reduceId = reduceId;
this.jobConf = jobConf;
this.localDirAllocator = localDirAllocator;
this.exceptionReporter = exceptionReporter;
this.reporter = reporter;
this.codec = codec;
this.combinerClass = combinerClass;
this.combineCollector = combineCollector;
this.reduceCombineInputCounter = reduceCombineInputCounter;
this.spilledRecordsCounter = spilledRecordsCounter;
this.mergedMapOutputsCounter = mergedMapOutputsCounter;
this.mapOutputFile = mapOutputFile;
this.mapOutputFile.setConf(jobConf);
this.localFS = localFS;
this.rfs = ((LocalFileSystem) localFS).getRaw();
final float maxInMemCopyUse = jobConf.getFloat(MRJobConfig.SHUFFLE_INPUT_BUFFER_PERCENT, 0.90f);
if (maxInMemCopyUse > 1.0 || maxInMemCopyUse < 0.0) {
throw new IllegalArgumentException(
"Invalid value for " + MRJobConfig.SHUFFLE_INPUT_BUFFER_PERCENT + ": " + maxInMemCopyUse);
}
// Allow unit tests to fix Runtime memory
this.memoryLimit =
(long)
(jobConf.getLong(
MRJobConfig.REDUCE_MEMORY_TOTAL_BYTES,
Math.min(Runtime.getRuntime().maxMemory(), Integer.MAX_VALUE))
* maxInMemCopyUse);
this.ioSortFactor = jobConf.getInt(MRJobConfig.IO_SORT_FACTOR, 100);
final float singleShuffleMemoryLimitPercent =
jobConf.getFloat(
MRJobConfig.SHUFFLE_MEMORY_LIMIT_PERCENT, DEFAULT_SHUFFLE_MEMORY_LIMIT_PERCENT);
if (singleShuffleMemoryLimitPercent <= 0.0f || singleShuffleMemoryLimitPercent > 1.0f) {
throw new IllegalArgumentException(
"Invalid value for "
+ MRJobConfig.SHUFFLE_MEMORY_LIMIT_PERCENT
+ ": "
+ singleShuffleMemoryLimitPercent);
}
usedMemory = 0L;
commitMemory = 0L;
this.maxSingleShuffleLimit = (long) (memoryLimit * singleShuffleMemoryLimitPercent);
this.memToMemMergeOutputsThreshold =
jobConf.getInt(MRJobConfig.REDUCE_MEMTOMEM_THRESHOLD, ioSortFactor);
this.mergeThreshold =
(long) (this.memoryLimit * jobConf.getFloat(MRJobConfig.SHUFFLE_MERGE_PERCENT, 0.90f));
LOG.info(
"MergerManager: memoryLimit="
+ memoryLimit
+ ", "
+ "maxSingleShuffleLimit="
+ maxSingleShuffleLimit
+ ", "
+ "mergeThreshold="
+ mergeThreshold
+ ", "
+ "ioSortFactor="
+ ioSortFactor
+ ", "
+ "memToMemMergeOutputsThreshold="
+ memToMemMergeOutputsThreshold);
if (this.maxSingleShuffleLimit >= this.mergeThreshold) {
throw new RuntimeException(
"Invlaid configuration: "
+ "maxSingleShuffleLimit should be less than mergeThreshold"
+ "maxSingleShuffleLimit: "
+ this.maxSingleShuffleLimit
+ "mergeThreshold: "
+ this.mergeThreshold);
}
boolean allowMemToMemMerge = jobConf.getBoolean(MRJobConfig.REDUCE_MEMTOMEM_ENABLED, false);
if (allowMemToMemMerge) {
this.memToMemMerger =
new IntermediateMemoryToMemoryMerger(this, memToMemMergeOutputsThreshold);
this.memToMemMerger.start();
} else {
this.memToMemMerger = null;
}
this.inMemoryMerger = createInMemoryMerger();
this.inMemoryMerger.start();
this.onDiskMerger = new OnDiskMerger(this);
this.onDiskMerger.start();
this.mergePhase = mergePhase;
}
public void configure(JobConf job) {
interval = job.getInt("db.fetch.interval.default", 2592000);
scoreInjected = job.getFloat("db.score.injected", 1.0f);
overwrite = job.getBoolean("db.injector.overwrite", false);
update = job.getBoolean("db.injector.update", false);
}
public void configure(JobConf job) {
maxDocLength = job.getFloat("max.doc.length", 500);
}
