/**
* Throw an exception if all the "to" sequence names in the chains are not found in the given
* sequence dictionary.
*/
public void validateToSequences(final SAMSequenceDictionary sequenceDictionary) {
for (final Chain chain : chains.getAll()) {
if (sequenceDictionary.getSequence(chain.toSequenceName) == null) {
throw new PicardException(
"Sequence "
+ chain.toSequenceName
+ " from chain file is not found in sequence dictionary.");
}
}
}
