public void doRFileEvaluate(final IScope scope, final IContainer param) {
int size = param.length(scope);
// if ( size == 0 ) { throw GamaRuntimeException.error("Missing Parameter Exception", scope); }
final String RFile = getPath();
try {
// Call R
RCaller caller = new RCaller();
String RPath = GamaPreferences.LIB_R.value(scope).getPath();
caller.setRscriptExecutable(RPath);
double[] vectorParam = new double[param.length(scope)];
int k = 0;
for (Object o : param.iterable(scope)) {
vectorParam[k++] = Cast.asFloat(scope, o);
}
RCode c = new RCode();
// Adding the parameters
c.addDoubleArray("vectorParam", vectorParam);
// Adding the codes in file
List<String> R_statements = new ArrayList<String>();
// tmthai.begin----------------------------------------------------------------------------
String fullPath = FileUtils.constructAbsoluteFilePath(scope, RFile, true);
if (DEBUG) {
GuiUtils.debug("Stats.R_compute_param.RScript:" + RPath);
GuiUtils.debug("Stats.R_compute_param.Param:" + vectorParam.toString());
GuiUtils.debug("Stats.R_compute_param.RFile:" + RFile);
GuiUtils.debug("Stats.R_compute_param.fullPath:" + fullPath);
}
// FileReader fr = new FileReader(RFile);
FileReader fr = new FileReader(fullPath);
// tmthai.end----------------------------------------------------------------------------
BufferedReader br = new BufferedReader(fr);
String statement;
while ((statement = br.readLine()) != null) {
c.addRCode(statement);
R_statements.add(statement);
// java.lang.System.out.println(statement);
}
br.close();
fr.close();
caller.setRCode(c);
GamaMap<String, IList> result = GamaMapFactory.create(Types.STRING, Types.LIST);
String var = computeVariable(R_statements.get(R_statements.size() - 1).toString());
caller.runAndReturnResult(var);
// DEBUG:
// java.lang.System.out.println("Name: '" + R_statements.length(scope) + "'");
if (DEBUG) {
GuiUtils.debug("Stats.R_compute_param.R_statements.length: '" + R_statements.size() + "'");
}
for (String name : caller.getParser().getNames()) {
String[] results = null;
results = caller.getParser().getAsStringArray(name);
// java.lang.System.out.println("Name: '" + name + "'");
if (DEBUG) {
GuiUtils.debug(
"Stats.R_compute_param.caller.Name: '"
+ name
+ "' length: "
+ results.length
+ " - Value: "
+ results.toString());
}
result.put(name, GamaListFactory.create(scope, Types.NO_TYPE, results));
}
if (DEBUG) {
GuiUtils.debug("Stats.R_compute_param.return:" + result.serialize(false));
}
setBuffer(result);
} catch (Exception ex) {
throw GamaRuntimeException.error("RCallerExecutionException " + ex.getMessage(), scope);
}
}
public void init(IScope scope) {
isAgentCreated = false;
varmap = GamaMapFactory.create(Types.NO_TYPE, Types.NO_TYPE);
numvarmap = GamaMapFactory.create(Types.NO_TYPE, Types.NO_TYPE);
qualivarmap = GamaMapFactory.create(Types.NO_TYPE, Types.NO_TYPE);
metadatahistory = new GamaObjectMatrix(0, 0, msi.gaml.types.Types.NO_TYPE);
lastdetailedvarvalues = new GamaObjectMatrix(0, 0, msi.gaml.types.Types.NO_TYPE);
averagehistory = new GamaFloatMatrix(0, 0);
stdevhistory = new GamaFloatMatrix(0, 0);
minhistory = new GamaFloatMatrix(0, 0);
maxhistory = new GamaFloatMatrix(0, 0);
distribhistoryparams = new GamaObjectMatrix(0, 0, msi.gaml.types.Types.NO_TYPE);
distribhistory = new GamaObjectMatrix(0, 0, msi.gaml.types.Types.NO_TYPE);
IList premlist = GamaListFactory.create(Types.NO_TYPE);
premlist.add(0);
premlist.add(0);
// premlist.add(0);
distribhistory.set(scope, 0, 0, premlist);
/*multi_metadatahistory = new GamaObjectMatrix(0,0);
multi_lastdetailedvarvalues = new GamaObjectMatrix(0,0);
multi_averagehistory = new GamaFloatMatrix(0,0);
multi_stdevhistory = new GamaFloatMatrix(0,0);
multi_minhistory = new GamaFloatMatrix(0,0);
multi_maxhistory = new GamaFloatMatrix(0,0);
multi_distribhistoryparams = new GamaObjectMatrix(0,0);
multi_distribhistory = new GamaObjectMatrix(0,0);
GamaList deuzlist=new GamaList();
deuzlist.add(0);
deuzlist.add(0);
//deuzlist.add(0);
multi_distribhistory.set(scope, 0, 0, deuzlist);
*/
}
@Override
public GamaMap mapValue(
final IScope scope, final IType keyType, final IType contentsType, final boolean copy)
throws GamaRuntimeException {
final IList<IAgent> agents = listValue(scope, contentsType, false);
// Default behavior : Returns a map containing the names of agents as keys and the agents
// themselves as values
final GamaMap result =
GamaMapFactory.create(Types.STRING, scope.getModelContext().getTypeNamed(getName()));
for (final IAgent agent : agents.iterable(scope)) {
result.put(agent.getName(), agent);
}
return result;
}
public void doRFileEvaluate(final IScope scope) {
final String RFile = getPath();
try {
// Call R
RCaller caller = new RCaller();
String RPath = GamaPreferences.LIB_R.value(scope).getPath();
caller.setRscriptExecutable(RPath);
// caller.setRscriptExecutable("\"" + RPath + "\"");
// if(java.lang.System.getProperty("os.name").startsWith("Mac"))
// {
// caller.setRscriptExecutable(RPath);
// }
RCode c = new RCode();
List<String> R_statements = new ArrayList<String>();
// tmthai.begin----------------------------------------------------------------------------
String fullPath = FileUtils.constructAbsoluteFilePath(scope, RFile, true);
if (DEBUG) {
GuiUtils.debug("Stats.R_compute.RScript:" + RPath);
GuiUtils.debug("Stats.R_compute.RFile:" + RFile);
GuiUtils.debug("Stats.R_compute.fullPath:" + fullPath);
}
// FileReader fr = new FileReader(RFile);
FileReader fr = new FileReader(fullPath);
// tmthai.end----------------------------------------------------------------------------
BufferedReader br = new BufferedReader(fr);
String statement;
while ((statement = br.readLine()) != null) {
c.addRCode(statement);
R_statements.add(statement);
// java.lang.System.out.println(statement);
if (DEBUG) {
GuiUtils.debug("Stats.R_compute.statement:" + statement);
}
}
fr.close();
br.close();
caller.setRCode(c);
GamaMap<String, IList> result = GamaMapFactory.create(Types.STRING, Types.LIST);
String var = computeVariable(R_statements.get(R_statements.size() - 1).toString());
caller.runAndReturnResult(var);
for (String name : caller.getParser().getNames()) {
Object[] results = null;
results = caller.getParser().getAsStringArray(name);
// for (int i = 0; i < results.length; i++) {
// java.lang.System.out.println(results[i]);
// }
if (DEBUG) {
GuiUtils.debug(
"Stats.R_compute_param.caller.Name: '"
+ name
+ "' length: "
+ results.length
+ " - Value: "
+ results.toString());
}
result.put(name, GamaListFactory.createWithoutCasting(Types.NO_TYPE, results));
}
if (DEBUG) {
GuiUtils.debug("Stats.R_compute.return:" + result.serialize(false));
}
// return result;
setBuffer(result);
} catch (Exception ex) {
throw GamaRuntimeException.error("RCallerExecutionException " + ex.getMessage(), scope);
}
}