private ForDeprecatedConstructors(
final AbstractSpimData<?> spimData,
final String windowTitle,
final ProgressWriter progressWriter) {
this.windowTitle = windowTitle;
this.progressWriter = progressWriter;
this.spimData = spimData;
windowWidth = 800;
windowHeight = 600;
if (WrapBasicImgLoader.wrapImgLoaderIfNecessary(spimData)) {
System.err.println(
"WARNING:\nOpening <SpimData> dataset that is not suited for interactive browsing.\nConsider resaving as HDF5 for better performance.");
}
converterSetups = new ArrayList<ConverterSetup>();
sources = new ArrayList<SourceAndConverter<?>>();
initSetups(spimData, converterSetups, sources);
final AbstractSequenceDescription<?, ?, ?> seq = spimData.getSequenceDescription();
numTimepoints = seq.getTimePoints().size();
cache = ((ViewerImgLoader<?, ?>) seq.getImgLoader()).getCache();
WrapBasicImgLoader.removeWrapperIfPresent(spimData);
}
@SuppressWarnings("unchecked")
public SpimSource(final AbstractSpimData<?> spimData, final int setup, final String name) {
super(spimData, setup, name);
final AbstractSequenceDescription<?, ?, ?> seq = spimData.getSequenceDescription();
imgLoader = (ViewerImgLoader<T, ?>) seq.getImgLoader();
loadTimepoint(0);
}
public static BigDataViewer open(
final AbstractSpimData<?> spimData,
final String windowTitle,
final ProgressWriter progressWriter) {
final int width = 800;
final int height = 600;
if (WrapBasicImgLoader.wrapImgLoaderIfNecessary(spimData)) {
System.err.println(
"WARNING:\nOpening <SpimData> dataset that is not suited for interactive browsing.\nConsider resaving as HDF5 for better performance.");
}
final ArrayList<ConverterSetup> converterSetups = new ArrayList<ConverterSetup>();
final ArrayList<SourceAndConverter<?>> sources = new ArrayList<SourceAndConverter<?>>();
initSetups(spimData, converterSetups, sources);
final AbstractSequenceDescription<?, ?, ?> seq = spimData.getSequenceDescription();
final int numTimepoints = seq.getTimePoints().size();
final Cache cache = ((ViewerImgLoader<?, ?>) seq.getImgLoader()).getCache();
final BigDataViewer bdv =
new BigDataViewer(
converterSetups,
sources,
spimData,
numTimepoints,
cache,
windowTitle,
width,
height,
progressWriter);
WrapBasicImgLoader.removeWrapperIfPresent(spimData);
bdv.viewerFrame.setVisible(true);
InitializeViewerState.initTransform(bdv.viewer);
return bdv;
}