/*.................................................................................................................*/
public int[] getTaxonNumberTranslation(Taxa taxa) {
int max = -1;
for (int it = 0; it < taxa.getNumTaxa(); it++) {
long translateNumber = getTaxonNumberInTree(taxa, it);
if (MesquiteLong.isCombinable(translateNumber) && translateNumber > max) {
max = (int) translateNumber;
}
}
int[] translate = new int[max + 1];
for (int it = 0; it < data.getNumTaxa(); it++) {
long translateNumber = getTaxonNumberInTree(taxa, it);
if (MesquiteLong.isCombinable(translateNumber) && translateNumber >= 0) {
translate[(int) translateNumber] = it;
}
}
return translate;
}
