/**
* This public static method runs the algorithm that this class concerns with.
*
* @param args Array of strings to sent parameters to the main program. The path of the
* algorithm's parameters file must be given.
*/
public static void main(String args[]) {
boolean tty = false;
ProcessConfig pc = new ProcessConfig();
System.out.println("Reading configuration file: " + args[0]);
if (pc.fileProcess(args[0]) < 0) return;
int algo = pc.parAlgorithmType;
rand = new Randomize();
rand.setSeed(pc.parSeed);
ClusterKMeans km = new ClusterKMeans();
km.clustering_kmeans(tty, pc);
}
/**
* This public static method runs the algorithm that this class concerns with.
*
* @param args Array of strings to sent parameters to the main program. The path of the
* algorithm's parameters file must be given.
*/
public static void main(String args[]) {
boolean tty = false;
ProcessConfig pc = new ProcessConfig();
System.out.println("Reading configuration file: " + args[0]);
if (pc.fileProcess(args[0]) < 0) return;
int algo = pc.parAlgorithmType;
rand = new Randomize();
rand.setSeed(pc.parSeed);
ModelFuzzyPittsBurgh pi = new ModelFuzzyPittsBurgh();
pi.fuzzyPittsburghModelling(tty, pc);
}
/**
* This method reads a configuration file and calls statisticalTest with appropriate values to run
* the Mann Whitney U test for classification problems, defined in StatTest class
*
* @param args A string that contains the command line arguments
*/
public static void main(String args[]) {
boolean tty = false;
ProcessConfig pc = new ProcessConfig();
System.out.println("Reading configuration file: " + args[0]);
if (pc.fileProcess(args[0]) < 0) return;
int algorithm = pc.parAlgorithmType;
rand = new Randomize();
rand.setSeed(pc.parSeed);
ParseFileList pl = new ParseFileList();
pl.statisticalTest(StatTest.MannWhitneyC, tty, pc);
}
/**
* Main method
*
* @param args Arguments of the program
*/
public static void main(String args[]) {
boolean tty = false;
ProcessConfig pc = new ProcessConfig();
System.out.println("Reading configuration file: " + args[0]);
if (pc.fileProcess(args[0]) < 0) {
return;
}
ParseFileList pl = new ParseFileList();
pl.statisticalTest(StatTest.MultipleR, tty, pc);
} // end-method
/**
* This private method extract the dataset and the method's parameters from the KEEL environment,
* calculates the centroids using the KMeans class and print out the results with the validation
* dataset.
*
* @param tty unused boolean parameter, kept for compatibility
* @param pc ProcessConfig object to obtain the train and test datasets and the method's
* parameters.
*/
private void clustering_kmeans(boolean tty, ProcessConfig pc) {
try {
String linea;
ProcessDataset pd = new ProcessDataset();
linea = (String) pc.parInputData.get(ProcessConfig.IndexTrain);
if (pc.parNewFormat) pd.processClusterDataset(linea, true);
else pd.procesa_clustering_old(linea);
int ndatos = pd.getNdata(); // Number of examples
int nvariables = pd.getNvariables(); // Number of variables
int nentradas = pd.getNinputs(); // Number of inputs
pd.showDatasetStatistics();
System.out.println("Number of examples=" + ndatos);
System.out.println("Number of inputs=" + nentradas);
double[][] X = pd.getX(); // Input data
double[] emaximo = pd.getImaximum(); // Maximum and Minimum for input data
double[] eminimo = pd.getIminimum();
int[] neparticion = new int[nentradas];
int s;
s = pc.parNClusters;
KMeans KM = new KMeans(X, s, rand);
double fallos = 0;
try {
for (int i = 0; i < X.length; i++) {
int clase = KM.nearestCentroid(X[i]);
// System.out.println("pattern="+i+" cluster="+clase);
}
} catch (Exception e) {
System.out.println(e.toString());
}
// Clusters in the test set
ProcessDataset pdt = new ProcessDataset();
int nprueba, npentradas, npvariables;
linea = (String) pc.parInputData.get(ProcessConfig.IndexTestKMeans);
if (pc.parNewFormat) pdt.processClusterDataset(linea, false);
else pdt.procesa_clustering_old(linea);
nprueba = pdt.getNdata();
npvariables = pdt.getNvariables();
npentradas = pdt.getNinputs();
pdt.showDatasetStatistics();
if (npentradas != nentradas) throw new IOException("Error in test file");
double[][] Xp = pdt.getX();
int[] Co = new int[Xp.length];
// Test set is classified
try {
for (int i = 0; i < Xp.length; i++) {
Co[i] = KM.nearestCentroid(Xp[i]);
// System.out.println("pattern test="+i+" cluster="+Co[i]);
}
} catch (Exception e) {
System.out.println(e.toString());
}
// Output format for clustering algorithms
pc.results(Xp, Co);
KM.print();
} catch (FileNotFoundException e) {
System.err.println(e + " Training data not found");
} catch (IOException e) {
System.err.println(e + " Read error");
}
}
/**
*
*
* <pre>
* This private static method extract the dataset and the method's parameters
* from the KEEL environment, carries out with the partitioning of the
* input and output spaces, learn the FRBS regression model --which is a
* {@link PittsburghClassifier} instance-- using the GP algorithm --which is an instance
* of the GeneticAlgorithm class-- and prints out the results with the validation
* dataset.
*
* If the parameter Steady is not fixed then the genetic algorithm used is the
* {@link GeneticAlgorithmGenerational}. If that parameter is fixed then the GP
* used is the {@link GeneticAlgorithmSteady}.
* </pre>
*
* @param tty unused boolean parameter, kept for compatibility
* @param pc ProcessConfig object to obtain the train and test datasets and the method's
* parameters.
*/
private static void fuzzyPittsburghModelling(boolean tty, ProcessConfig pc) {
try {
String readALine = new String();
int lOption = 0;
int defaultNumberInputPartitions = 0;
int numberOfCrossovers = 0;
ProcessDataset pd = new ProcessDataset();
readALine = (String) pc.parInputData.get(ProcessConfig.IndexTrain);
if (pc.parNewFormat) pd.processModelDataset(readALine, true);
else pd.oldClassificationProcess(readALine);
int nData = pd.getNdata(); // Number of examples
int nVariables = pd.getNvariables(); // Number of variables
int nInputs = pd.getNinputs(); // Number of inputs
double[][] X = pd.getX(); // Input data
double[] Y = pd.getY(); // Output data
double[] Yt = new double[Y.length];
pd.showDatasetStatistics();
double[] inputMaximum = pd.getImaximum(); // Maximum and Minimum for input data
double[] inputMinimum = pd.getIminimum();
double outputMaximum = pd.getOmaximum(); // Maximum and Minimum for output data
double outputMinimum = pd.getOminimum();
int[] nInputPartitions = new int[nInputs]; // Linguistic partition terms
int nOutputPartitions;
// Partitions definition
// Check the number of rules
int nrules = 1;
FuzzyPartition[] inputPartitions = new FuzzyPartition[nInputs];
for (int i = 0; i < nInputs; i++) {
nInputPartitions[i] = pc.parPartitionLabelNum;
inputPartitions[i] =
new FuzzyPartition(inputMinimum[i], inputMaximum[i], nInputPartitions[i]);
nrules *= nInputPartitions[i];
if (nrules > MAXFUZZYRULES) break;
}
nOutputPartitions = pc.parPartitionLabelNum;
FuzzyPartition outputPartitions =
new FuzzyPartition(outputMinimum, outputMaximum, nOutputPartitions);
System.out.println("Number of rules = " + nrules);
if (nrules < MAXFUZZYRULES) {
int lPopulation = pc.parPopSize;
int localnPopulations = pc.parIslandNumber;
boolean STEADY = pc.parSteady;
int defuzzificationType = RuleBase.DEFUZCDM;
// Rule base
FuzzyModel sistema =
new FuzzyModel(
inputPartitions,
outputPartitions,
RuleBase.product,
RuleBase.sum,
defuzzificationType);
// Genetic Algorithm Optimization
PittsburghModel p = new PittsburghModel(sistema, pc.parFitnessType, rand);
p.setExamples(X, Y);
int nIterations = pc.parIterNumber;
GeneticAlgorithm AG;
int crossoverID = OperatorIdent.GENERICROSSOVER;
int mutationID = OperatorIdent.GENERICMUTATION;
int lTournament = 4;
double mutacion = 0.05;
double lmutationAmpl = 0.1;
double migrationProb = 0.001;
double localOptProb = 0.0;
int localOptIterations = 0;
lTournament = pc.parTourSize;
mutacion = pc.parMutProb;
lmutationAmpl = pc.parMutAmpl;
migrationProb = pc.parMigProb;
localOptProb = pc.parLoProb;
localOptIterations = pc.parLoIterNumber;
if (STEADY)
AG =
new GeneticAlgorithmSteady(
p,
lPopulation,
localnPopulations,
lTournament,
mutacion,
lmutationAmpl,
migrationProb,
localOptProb,
localOptIterations,
OperatorIdent.AMEBA,
rand,
crossoverID,
mutationID);
else
AG =
new GeneticAlgorithmGenerational(
p,
lPopulation,
localnPopulations,
mutacion,
lmutationAmpl,
migrationProb,
localOptProb,
localOptIterations,
OperatorIdent.AMEBA,
rand,
crossoverID,
mutationID);
p = (PittsburghModel) AG.evolve(nIterations);
// Result is printed
p.debug();
pc.trainingResults(Y, p.getYo());
System.out.println("RMS Train = " + p.fitness());
ProcessDataset pdt = new ProcessDataset();
int nTest, nTestInputs, nTestVariables;
readALine = (String) pc.parInputData.get(ProcessConfig.IndexTest);
if (pc.parNewFormat) pdt.processModelDataset(readALine, false);
else pdt.oldClassificationProcess(readALine);
nTest = pdt.getNdata();
nTestVariables = pdt.getNvariables();
nTestInputs = pdt.getNinputs();
pdt.showDatasetStatistics();
if (nTestInputs != nInputs) throw new IOException("IOERR Test file");
double[][] Xp = pdt.getX();
double[] Yp = pdt.getY();
p.setExamples(Xp, Yp);
System.out.println("RMS test = " + p.fitness());
pc.results(Yp, p.getYo());
} else {
pc.trainingResults(Y, Yt);
ProcessDataset pdt = new ProcessDataset();
int nTest, nTestInputs, nTestVariables;
readALine = (String) pc.parInputData.get(ProcessConfig.IndexTest);
if (pc.parNewFormat) pdt.processModelDataset(readALine, false);
else pdt.oldClassificationProcess(readALine);
nTest = pdt.getNdata();
nTestVariables = pdt.getNvariables();
nTestInputs = pdt.getNinputs();
pdt.showDatasetStatistics();
if (nTestInputs != nInputs) throw new IOException("IOERR test file");
double[][] Xp = pdt.getX();
double[] Yp = pdt.getY();
double[] Yo = new double[Yp.length];
System.out.println("Generating constant output (0)");
// Yo = 0
pc.results(Yp, Yo);
}
} catch (FileNotFoundException e) {
System.err.println(e + " Input file not found");
} catch (IOException e) {
System.err.println(e + " Read Error");
} catch (invalidFitness e) {
System.err.println(e);
} catch (invalidCrossover e) {
System.err.println(e);
} catch (invalidMutation e) {
System.err.println(e);
} catch (invalidOptim e) {
System.err.println(e);
}
}