// TODO zgire - why iterate through tracksToRemove if you end up calling clearFeatures() at the
// end?
public void clearTracksForReloadState() {
ArrayList<HiCTrack> tracksToRemove = new ArrayList<HiCTrack>(trackManager.getLoadedTracks());
for (HiCTrack trackToRemove : tracksToRemove) {
if (trackToRemove.getName().equals(eigString)) {
eigenvectorTrack = null;
} else if (trackToRemove.getName().equals(ctrlEigString)) {
controlEigenvectorTrack = null;
} else {
trackManager.removeTrack(trackToRemove);
}
}
clearFeatures();
superAdapter.updateTrackPanel();
}
public void removeTrack(HiCTrack track) {
if (resourceTree != null) resourceTree.remove(track.getLocator());
if (encodeAction != null) encodeAction.remove(track.getLocator());
trackManager.removeTrack(track);
}