public ArrayList validateXML(String xmlMessage) {
StringBuffer validationError = new StringBuffer("");
String result = "Pass";
ArrayList list = new ArrayList();
SubmitManufacturerPartyData sb = null;
InputStream inFile = null;
try {
inFile = new ByteArrayInputStream(xmlMessage.getBytes());
SchemaFactory schemaFactory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI);
Schema schema = schemaFactory.newSchema(new File("PartydataManufacturer.xsd"));
JAXBContext ctx = JAXBContext.newInstance(new Class[] {SubmitManufacturerPartyData.class});
Unmarshaller um = ctx.createUnmarshaller();
um.setSchema(schema);
sb = (SubmitManufacturerPartyData) um.unmarshal(inFile);
} catch (SAXException e) {
result = "Fail";
e.printStackTrace();
} catch (UnmarshalException umex) {
result = "Fail";
System.out.println("---------- XML Validation Error -------------- ");
System.out.println("#######" + umex.getLinkedException().getMessage());
umex.printStackTrace();
} catch (Exception e) {
result = "Fail";
e.printStackTrace();
}
list.add(sb);
list.add(result);
return list;
}
/** {@inheritDoc} */
@Override
public SBOLDocument read(InputStream in) throws IOException, SBOLValidationException {
try {
Unmarshaller unmarshaller = JAXB.CONTEXT.createUnmarshaller();
if (validate) {
unmarshaller.setSchema(JAXB.SCHEMA);
}
SBOLDocument doc = (SBOLDocument) unmarshaller.unmarshal(in);
doc.accept(new PrecedeReferenceFinder());
doc.accept(new DuplicateRemover());
if (validate) {
new SBOLValidatorImpl().validateWithoutSchema(doc);
}
return doc;
} catch (SBOLValidationException e) {
throw e;
} catch (UnmarshalException e) {
if (e.getLinkedException() != null) {
throw new SBOLValidationException(e.getLinkedException());
} else {
throw new SBOLValidationException(e);
}
} catch (Exception e) {
throw new IOException(e);
}
}
/**
* Get a Part (except a relationships part), but not its relationships part or related parts.
* Useful if you need quick access to just this part. This can be called directly from outside the
* library, in which case the Part will not be owned by a Package until the calling code makes it
* so.
*
* @see To get a Part and all its related parts, and add all to a package, use getPart.
* @param partByteArrays
* @param ctm
* @param resolvedPartUri
* @param rel
* @return
* @throws Docx4JException including if result is null
*/
public Part getRawPart(ContentTypeManager ctm, String resolvedPartUri, Relationship rel)
throws Docx4JException {
Part part = null;
InputStream is = null;
try {
try {
log.debug("resolved uri: " + resolvedPartUri);
// Get a subclass of Part appropriate for this content type
// This will throw UnrecognisedPartException in the absence of
// specific knowledge. Hence it is important to get the is
// first, as we do above.
part = ctm.getPart("/" + resolvedPartUri, rel);
log.info("ctm returned " + part.getClass().getName());
if (part instanceof org.docx4j.openpackaging.parts.ThemePart
|| part instanceof org.docx4j.openpackaging.parts.DocPropsCorePart
|| part instanceof org.docx4j.openpackaging.parts.DocPropsCustomPart
|| part instanceof org.docx4j.openpackaging.parts.DocPropsExtendedPart
|| part instanceof org.docx4j.openpackaging.parts.CustomXmlDataStoragePropertiesPart
|| part instanceof org.docx4j.openpackaging.parts.digitalsignature.XmlSignaturePart
|| part instanceof org.docx4j.openpackaging.parts.JaxbXmlPart) {
// Nothing to do here
} else if (part instanceof org.docx4j.openpackaging.parts.WordprocessingML.BinaryPart) {
log.debug("Detected BinaryPart " + part.getClass().getName());
// is = partStore.loadPart( resolvedPartUri);
// ((BinaryPart)part).setBinaryData(is);
} else if (part instanceof org.docx4j.openpackaging.parts.CustomXmlDataStoragePart) {
// ContentTypeManager initially detects them as CustomXmlDataStoragePart;
// the below changes as necessary
// Is it a part we know?
is = partStore.loadPart(resolvedPartUri);
try {
Unmarshaller u = Context.jc.createUnmarshaller();
Object o = u.unmarshal(is);
log.debug(o.getClass().getName());
PartName name = part.getPartName();
if (o instanceof CoverPageProperties) {
part = new DocPropsCoverPagePart(name);
((DocPropsCoverPagePart) part).setJaxbElement((CoverPageProperties) o);
} else if (o instanceof org.opendope.conditions.Conditions) {
part = new ConditionsPart(name);
((ConditionsPart) part).setJaxbElement((org.opendope.conditions.Conditions) o);
} else if (o instanceof org.opendope.xpaths.Xpaths) {
part = new XPathsPart(name);
((XPathsPart) part).setJaxbElement((org.opendope.xpaths.Xpaths) o);
} else if (o instanceof org.opendope.questions.Questionnaire) {
part = new QuestionsPart(name);
((QuestionsPart) part).setJaxbElement((org.opendope.questions.Questionnaire) o);
} else if (o instanceof org.opendope.answers.Answers) {
part = new StandardisedAnswersPart(name);
((StandardisedAnswersPart) part).setJaxbElement((org.opendope.answers.Answers) o);
} else if (o instanceof org.opendope.components.Components) {
part = new ComponentsPart(name);
((ComponentsPart) part).setJaxbElement((org.opendope.components.Components) o);
} else if (o instanceof JAXBElement<?>
&& XmlUtils.unwrap(o) instanceof org.docx4j.bibliography.CTSources) {
part = new BibliographyPart(name);
((BibliographyPart) part)
.setJaxbElement((JAXBElement<org.docx4j.bibliography.CTSources>) o);
} else {
log.error("TODO: handle known CustomXmlPart part " + o.getClass().getName());
CustomXmlDataStorage data = getCustomXmlDataStorageClass().factory();
is.reset();
data.setDocument(is); // Not necessarily JAXB, that's just our method name
((org.docx4j.openpackaging.parts.CustomXmlDataStoragePart) part).setData(data);
}
} catch (javax.xml.bind.UnmarshalException ue) {
log.warn("No JAXB model for this CustomXmlDataStorage part; " + ue.getMessage());
CustomXmlDataStorage data = getCustomXmlDataStorageClass().factory();
is.reset();
data.setDocument(is); // Not necessarily JAXB, that's just our method name
((org.docx4j.openpackaging.parts.CustomXmlDataStoragePart) part).setData(data);
}
} else if (part instanceof org.docx4j.openpackaging.parts.XmlPart) {
is = partStore.loadPart(resolvedPartUri);
// try {
((XmlPart) part).setDocument(is);
// Experimental 22/6/2011; don't fall back to binary (which we used to)
// } catch (Docx4JException d) {
// // This isn't an XML part after all,
// // even though ContentTypeManager detected it as such
// // So get it as a binary part
// part = getBinaryPart(partByteArrays, ctm, resolvedPartUri);
// log.warn("Could not parse as XML, so using BinaryPart for "
// + resolvedPartUri);
// ((BinaryPart)part).setBinaryData(is);
// }
} else {
// Shouldn't happen, since ContentTypeManagerImpl should
// return an instance of one of the above, or throw an
// Exception.
log.error("No suitable part found for: " + resolvedPartUri);
part = null;
}
} catch (PartUnrecognisedException e) {
log.error("PartUnrecognisedException shouldn't happen anymore!", e);
// Try to get it as a binary part
part = getBinaryPart(ctm, resolvedPartUri);
log.warn("Using BinaryPart for " + resolvedPartUri);
// is = partStore.loadPart( resolvedPartUri);
// ((BinaryPart)part).setBinaryData(is);
}
} catch (Exception ex) {
// IOException, URISyntaxException
ex.printStackTrace();
throw new Docx4JException("Failed to getPart", ex);
} finally {
IOUtils.closeQuietly(is);
}
if (part == null) {
throw new Docx4JException(
"cannot find part "
+ resolvedPartUri
+ " from rel "
+ rel.getId()
+ "="
+ rel.getTarget());
}
return part;
}