protected void loadOntology() {
try {
manager = OWLManager.createOWLOntologyManager();
URI physicalURI = URI.create(PREFERENCES.getOntologyURL());
// Now do the loading
ontology = manager.loadOntologyFromPhysicalURI(physicalURI);
manager.setPhysicalURIForOntology(ontology, physicalURI);
} catch (final Exception e) {
Runnable runnable =
new Runnable() {
public void run() {
JOptionPane.showMessageDialog(
null,
"Could not create the ontology. (This probably happened\n"
+ "because the ontology could not be accessed due to network\n"
+ "problems.)\n"
+ "["
+ e.getMessage()
+ "]",
"Error",
JOptionPane.ERROR_MESSAGE);
System.exit(1);
}
};
SwingUtilities.invokeLater(runnable);
}
}
private OWLDescription createIncludeCoffeeDescription(Set<OWLClass> includeExtras) {
OWLObjectProperty prop =
this.getNamedObjectProperty(PREFERENCES.getExtrasPropertyName()); // has_extras
Set<OWLDescription> classes = new HashSet<OWLDescription>();
classes.add(getCoffeeClass()); // get OWL class for Coffee
for (OWLClass extra : includeExtras) {
classes.add(manager.getOWLDataFactory().getOWLObjectSomeRestriction(prop, extra));
}
return manager.getOWLDataFactory().getOWLObjectIntersectionOf(classes);
}
private OWLDescription createExcludeCoffeeDescription(Set<OWLClass> excludeExtras) {
OWLObjectProperty prop =
this.getNamedObjectProperty(PREFERENCES.getExtrasPropertyName()); // has_extras
Set<OWLDescription> classes = new HashSet<OWLDescription>();
// Everything must be a coffee
for (OWLClass extra : excludeExtras) {
classes.add(manager.getOWLDataFactory().getOWLObjectSomeRestriction(prop, extra));
}
// are looking for.
return manager.getOWLDataFactory().getOWLObjectUnionOf(classes);
}
/** setup fact++ reasoner */
protected void setupReasoner() {
// run reasoner
try {
reasoner = new Reasoner(manager);
} catch (Exception e) {
e.printStackTrace(); // To change body of catch statement use File | Settings | File
// Templates.
}
try {
if (reasoner != null) {
reasoner.loadOntologies(manager.getOntologies());
reasoner.classify();
}
} catch (final OWLReasonerException e) {
Runnable runnable =
new Runnable() {
public void run() {
JOptionPane.showMessageDialog(
null,
"A reasoner error has ocurred.\n" + "[" + e.getMessage() + "]",
"Reasoner Error",
JOptionPane.ERROR_MESSAGE);
}
};
}
;
}
/**
* @param entity
* @return
*/
public String render(OWLEntity entity) {
for (OWLOntology ont : manager.getOntologies()) {
for (OWLAnnotation annot : entity.getAnnotations(ont)) {
if (annot.getAnnotationURI().equals(OWLRDFVocabulary.RDFS_LABEL.getURI())) {
if (annot instanceof OWLConstantAnnotation) {
return ((OWLConstantAnnotation) annot).getAnnotationValue().getLiteral();
}
}
}
}
return entity.getURI().getFragment();
}
/**
* Creates OWLDescription (query) by given included extras and excluded extras
*
* @param includeExtras
* @param excludeExtras
* @return
*/
private OWLDescription createCoffeeDescription(
Set<OWLClass> includeExtras, Set<OWLClass> excludeExtras) {
// Include means existential restrictions
// Exclude means negated existential restrictions
OWLObjectProperty prop =
this.getNamedObjectProperty(PREFERENCES.getExtrasPropertyName()); // has_extras
// Create a hash set to store the components (existential restrictions)
// of our description
Set<OWLDescription> classes = new HashSet<OWLDescription>();
// Everything must be a coffee
classes.add(getCoffeeClass()); // get OWL class for Coffee
// Create the existential restrictions that represent the extras
// that we want to include.
for (OWLClass extra : includeExtras) {
// e.g. hasExtras some ex_A , hasExtras some ex_B
classes.add(manager.getOWLDataFactory().getOWLObjectSomeRestriction(prop, extra));
}
// Create the negated existential restrictions of the extras that we
// want to exclude
for (OWLClass excludeExtra : excludeExtras) {
// has_topping some topping_A
OWLDescription restriction =
manager.getOWLDataFactory().getOWLObjectSomeRestriction(prop, excludeExtra);
// not (has_topping some topping_A)
OWLObjectComplementOf neg = manager.getOWLDataFactory().getOWLObjectComplementOf(restriction);
classes.add(neg);
}
// Bind the whole thing up in an intersection class
// to create a concept description of the coffee we
// are looking for.
return manager.getOWLDataFactory().getOWLObjectIntersectionOf(classes);
}
/**
* Gets the property by given name, e.g. has_topping
*
* @param propName
* @return
*/
public OWLObjectProperty getNamedObjectProperty(String propName) {
if (objPropNameCache == null) {
objPropNameCache = new HashMap<String, URI>();
for (OWLOntology ont : reasoner.getLoadedOntologies()) {
for (OWLObjectProperty prop : ont.getReferencedObjectProperties()) {
objPropNameCache.put(prop.toString(), prop.getURI());
}
}
}
// search the HashMap
OWLObjectProperty namedProp = null;
URI uri = objPropNameCache.get(propName);
if (uri != null) {
namedProp = manager.getOWLDataFactory().getOWLObjectProperty(uri);
} else {
System.err.println("Cannot find object property: " + propName + " in loaded ontologies");
}
return namedProp;
}
/**
* Gets OWL class by given name
*
* @param className
* @return
* @throws OWLReasonerException
*/
public OWLClass getNamedClass(String className) {
if (classnameCache == null) {
classnameCache = new HashMap<String, URI>();
for (OWLOntology ont : reasoner.getLoadedOntologies()) {
for (OWLClass cls : ont.getReferencedClasses()) {
classnameCache.put(cls.toString(), cls.getURI());
}
}
}
OWLClass namedCls = null;
URI uri = classnameCache.get(className);
if (uri != null) {
namedCls = manager.getOWLDataFactory().getOWLClass(uri);
} else {
System.err.println("Cannot find class: " + className + " in loaded ontologies");
}
return namedCls;
}
