private IFD writeYCbCrImage(
ImageOutputStream out, BufferedImage image, int comp, TIFFImageWriteParam param)
throws IOException {
image = convert(image, BufferedImage.TYPE_INT_RGB);
try {
int width = image.getWidth();
int height = image.getHeight();
IFD ifd = new IFD(); // entries need to be in tag order !
int ss = (param == null) ? 0x22 : param.getSubSampling();
int ssh = (ss >> 4) & 0x0F;
int ssv = ss & 0x0F;
if (ssh
< ssv) { // YCbCrSubsampleVert shall always be less than or equal to YCbCrSubsampleHoriz.
throw new IOException(
"Internal error: YCbCrSubsampleVert is not less than YCbCrSubsampleHoriz.");
}
// int ww=((width +ssh-1)/ssh)*ssh; // [1] p.92
// int hh=((height+ssv-1)/ssv)*ssv;
int ww = width;
int hh = height;
ifd.add(new DEFactory.NewSubfileTypeDE(2)); // 254 single page of multipage file
ifd.add(new DEFactory.ImageWidthDE(ww)); // 256
ifd.add(new DEFactory.ImageLengthDE(hh)); // 257
DEFactory.BitsPerSampleDE bpss = new DEFactory.BitsPerSampleDE(3);
bpss.setBitsPerSample(0, 8); // Y
bpss.setBitsPerSample(1, 8); // Cb
bpss.setBitsPerSample(2, 8); // Cr
ifd.add(bpss); // 258
ifd.add(new DEFactory.CompressionDE(comp)); // 259
ifd.add(new DEFactory.PhotometricInterpretationDE(YCbCr)); // 262
int maxrps, maxstripes; // max RowsPerStrip
if ((1 << 13) <= width) {
maxrps = 1;
maxstripes = height; // one row per strip
} else {
maxrps = (1 << 13) / width;
maxstripes = (height + maxrps - 1) / maxrps;
}
if (comp == JPEG) {
maxrps = ((maxrps + 8 * ssv - 1) / (8 * ssv)) * (8 * ssv);
maxstripes = (height + maxrps - 1) / maxrps;
}
DEFactory.StripOffsetsDE offsets = new DEFactory.StripOffsetsDE(maxstripes);
ifd.add(offsets); // 273
ifd.add(new DEFactory.SamplesPerPixelDE(3)); // 277
ifd.add(new DEFactory.RowsPerStripDE(maxrps)); // 278
DEFactory.StripByteCountsDE counts = new DEFactory.StripByteCountsDE(maxstripes);
ifd.add(counts); // 279
if (param == null) {
ifd.add(new DEFactory.XResolutionDE(72.0)); // 282
ifd.add(new DEFactory.YResolutionDE(72.0)); // 283
} else {
ifd.add(new DEFactory.XResolutionDE(param.getXResolution())); // 282
ifd.add(new DEFactory.YResolutionDE(param.getYResolution())); // 283
}
ifd.add(new DEFactory.ResolutionUnitDE(Inch)); // 296
ByteArrayOutputStream baos = new ByteArrayOutputStream();
OutputStream os = baos;
JPEGOutputStream jpegos = null;
if (comp == JPEG) {
jpegos = new JPEGOutputStream(baos);
int quality = (param == null) ? 50 : (int) (param.getCompressionQuality() * 100);
jpegos.setZZQuantizationTable(0, JPEGConstants.LQT, quality);
jpegos.setZZQuantizationTable(1, JPEGConstants.CQT, quality);
jpegos.setRawDCHuffmanTable(0, JPEGConstants.HLDCTable);
jpegos.setRawACHuffmanTable(0, JPEGConstants.HLACTable);
jpegos.setRawDCHuffmanTable(1, JPEGConstants.HCDCTable);
jpegos.setRawACHuffmanTable(1, JPEGConstants.HCACTable);
jpegos.defineQuantizationTables();
jpegos.defineHuffmanTables();
jpegos.close();
DEFactory.JPEGTablesDE jpegtables = new DEFactory.JPEGTablesDE(baos.toByteArray());
ifd.add(jpegtables); // 347
baos.reset();
os = jpegos;
}
// CCIR Recommendation 601-1 LumaRed=299/1000 LumaGreen=587/1000 LumeBlue=114/1000
// Y = ( LumaRed * R + LumaGreen * G + LumaBlue * B )
// Cb = ( B - Y ) / ( 2 - 2 * LumaBlue )
// Cr = ( R - Y ) / ( 2 - 2 * LumaRed )
double LumaRed = 299.0 / 1000.0;
double LumaGreen = 587.0 / 1000.0;
double LumaBlue = 114.0 / 1000.0;
DEFactory.YCbCrCoefficientsDE YCbCrCoeff = new DEFactory.YCbCrCoefficientsDE();
YCbCrCoeff.setLumaRed(LumaRed); // Y
YCbCrCoeff.setLumaGreen(LumaGreen); // Cb
YCbCrCoeff.setLumaBlue(LumaBlue); // Cr
ifd.add(YCbCrCoeff); // 529
DEFactory.YCbCrSubSamplingDE YCbCrSubSampling = new DEFactory.YCbCrSubSamplingDE();
YCbCrSubSampling.setHoriz(ssh);
YCbCrSubSampling.setVert(ssv);
ifd.add(YCbCrSubSampling); // 530
double RfBY = 0;
double RfWY = 255;
double RfBCb = 128;
double RfWCb = 255;
double RfBCr = 128;
double RfWCr = 255;
DEFactory.ReferenceBlackWhiteDE ReferenceBlackWhite = new DEFactory.ReferenceBlackWhiteDE();
ReferenceBlackWhite.setY(RfBY, RfWY);
ReferenceBlackWhite.setCb(RfBCb, RfWCb);
ReferenceBlackWhite.setCr(RfBCr, RfWCr);
ifd.add(ReferenceBlackWhite); // 532
TIFFYCbCrOutputStream ycbcros;
if (jpegos == null) {
ycbcros = new TIFFYCbCrOutputStream(os, width, ssv, ssh);
os = new TIFFSubSamplingOutputStream(ycbcros, width, ssv, ssh);
} else {
ycbcros = new TIFFYCbCrOutputStream(os, width, 1, 1); // jpeg does own subsampling
os = ycbcros;
}
ycbcros.setPositioning(1);
ycbcros.setColourCoefficients(LumaRed, LumaGreen, LumaBlue);
ycbcros.setRfBWY(RfBY, RfWY);
ycbcros.setRfBWCb(RfBCb, RfWCb);
ycbcros.setRfBWCr(RfBCr, RfWCr);
WritableRaster raster = image.getRaster();
DataBufferInt buffer = (DataBufferInt) raster.getDataBuffer();
int[] imgdata = (int[]) buffer.getData();
int c = 0, index = 0;
for (int y = 0; y < height; y += maxrps) {
if ((height - y) < maxrps) {
maxrps = height - y;
}
if (jpegos != null) {
jpegos.startOfImage();
int[] hv = {(ssh << 4) | ssv, 0x11, 0x11}; // (Hi<<4)|Vi
int[] q = {0, 1, 1}; // quantization table Y=0, Cb=Cr=1
// jpegos.startOfFrame(((maxrps+ssv-1)/ssv)*ssv,ww,hv,q);
jpegos.startOfFrame(maxrps, ww, hv, q);
int[] sel = {0, 1, 1}; // DC,AC code table Y=0, Cb=Cr=1
jpegos.startOfScan(sel);
}
for (int i = 0; i < maxrps; i++) {
int x = 0;
while (x < width) {
c = imgdata[x + (y + i) * width];
// c = image.getRGB(x,y+i);
os.write((c >> 16) & 0x000000FF);
os.write((c >> 8) & 0x000000FF);
os.write(c & 0x000000FF);
x++;
}
while (x < ww) {
os.write((c >> 16) & 0x000000FF);
os.write((c >> 8) & 0x000000FF);
os.write(c & 0x000000FF);
x++;
}
}
os.close();
byte[] data = baos.toByteArray();
counts.setCount(index, data.length); // update ifd strip counter array
offsets.setOffset(index, out.getStreamPosition()); // update ifd image data offset array
out.write(data); // write to image stream
baos.reset();
index++;
}
return ifd;
} catch (Exception e) {
e.printStackTrace();
throw new IOException(getClass().getName() + ".writeYCbCrImage:\n\t" + e.getMessage());
}
}
private IFD writeCMYKImage(ImageOutputStream out, BufferedImage image, TIFFImageWriteParam param)
throws IOException {
try {
int width = image.getWidth();
int height = image.getHeight();
IFD ifd = new IFD(); // entries need to be in tag order !
ifd.add(new DEFactory.NewSubfileTypeDE(2)); // 254 single page of multipage file
ifd.add(new DEFactory.ImageWidthDE(width)); // 256
ifd.add(new DEFactory.ImageLengthDE(height)); // 257
DEFactory.BitsPerSampleDE bpss = new DEFactory.BitsPerSampleDE(4);
bpss.setBitsPerSample(0, 8); // cyan
bpss.setBitsPerSample(1, 8); // magneta
bpss.setBitsPerSample(2, 8); // yellow
bpss.setBitsPerSample(3, 8); // key (black)
ifd.add(bpss); // 258
ifd.add(new DEFactory.CompressionDE(NOCOMPRESSION)); // 259
ifd.add(new DEFactory.PhotometricInterpretationDE(CMYK)); // 262
int maxrps, maxstripes; // max RowsPerStrip
if ((1 << 13) <= width) {
maxrps = 1;
maxstripes = height; // one row per strip
} else {
maxrps = (1 << 13) / width;
maxstripes = (height + maxrps - 1) / maxrps;
}
DEFactory.StripOffsetsDE offsets = new DEFactory.StripOffsetsDE(maxstripes);
ifd.add(offsets); // 273
ifd.add(new DEFactory.SamplesPerPixelDE(4)); // 277
ifd.add(new DEFactory.RowsPerStripDE(maxrps)); // 278
DEFactory.StripByteCountsDE counts = new DEFactory.StripByteCountsDE(maxstripes);
ifd.add(counts); // 279
if (param == null) {
ifd.add(new DEFactory.XResolutionDE(72.0)); // 282
ifd.add(new DEFactory.YResolutionDE(72.0)); // 283
} else {
ifd.add(new DEFactory.XResolutionDE(param.getXResolution())); // 282
ifd.add(new DEFactory.YResolutionDE(param.getYResolution())); // 283
}
ifd.add(new DEFactory.ResolutionUnitDE(Inch)); // 296
int index = 0;
for (int y = 0; y < height; y += maxrps) {
/*
Assume rgb image.
Each strip: evaluate c m y k colour
save in byte array
write to image file
*/
ByteArrayOutputStream baos = new ByteArrayOutputStream();
for (int i = 0; i < maxrps; i++) {
if ((y + i) == height) {
break;
} // last strip might have less rows
for (int x = 0; x < width; x++) {
int c = image.getRGB(x, y + i);
int R = (c >> 16) & 0x00FF;
int G = (c >> 8) & 0x00FF;
int B = (c) & 0x00FF;
if ((R == 255) && (G == 255) && (B == 255)) {
baos.write(0);
baos.write(0);
baos.write(0);
baos.write(0);
} else {
double C = 1.0 - R / 255.0;
double M = 1.0 - G / 255.0;
double Y = 1.0 - B / 255.0;
double K = C;
if (M < K) {
K = M;
}
if (Y < K) {
K = Y;
}
C = ((C - K) / (1.0 - K)) * 255.0;
M = ((M - K) / (1.0 - K)) * 255.0;
Y = ((Y - K) / (1.0 - K)) * 255.0;
K *= 255.0;
baos.write((int) C);
baos.write((int) M);
baos.write((int) Y);
baos.write((int) K);
}
}
}
baos.close();
byte[] data = baos.toByteArray();
counts.setCount(index, data.length); // update ifd strip counter array
offsets.setOffset(index, out.getStreamPosition()); // update ifd image data offset array
out.write(data); // write to image stream
index++;
}
return ifd;
} catch (Exception e) {
e.printStackTrace();
throw new IOException(getClass().getName() + ".writeCMYKImage:\n\t" + e.getMessage());
}
}
private IFD writeBModHufImage(
ImageOutputStream out, BufferedImage image, TIFFImageWriteParam param) throws IOException {
try {
int width = image.getWidth();
int height = image.getHeight();
IFD ifd = new IFD(); // entries need to be in tag order !
ifd.add(new DEFactory.NewSubfileTypeDE(2)); // 254 single page of multipage file
ifd.add(new DEFactory.ImageWidthDE(width)); // 256
ifd.add(new DEFactory.ImageLengthDE(height)); // 257
ifd.add(new DEFactory.CompressionDE(CCITTGROUP3MODHUFFMAN)); // 259
ifd.add(new DEFactory.PhotometricInterpretationDE(WhiteIsZero)); // 262
int maxrps, maxstripes; // max RowsPerStrip
if ((1 << 13) <= width) {
maxrps = 1;
maxstripes = height; // one row per stripe
} else {
maxrps = (1 << 13) / width;
maxstripes = (height + maxrps - 1) / maxrps;
}
DEFactory.StripOffsetsDE offsets = new DEFactory.StripOffsetsDE(maxstripes);
ifd.add(offsets); // 273
ifd.add(new DEFactory.RowsPerStripDE(maxrps)); // 278
DEFactory.StripByteCountsDE counts = new DEFactory.StripByteCountsDE(maxstripes);
ifd.add(counts); // 279
if (param == null) {
ifd.add(new DEFactory.XResolutionDE(72.0)); // 282
ifd.add(new DEFactory.YResolutionDE(72.0)); // 283
} else {
ifd.add(new DEFactory.XResolutionDE(param.getXResolution())); // 282
ifd.add(new DEFactory.YResolutionDE(param.getYResolution())); // 283
}
ifd.add(new DEFactory.ResolutionUnitDE(Inch)); // 296
int index = 0;
for (int y = 0; y < height; y += maxrps) {
/*
Assume bilevel image (black/white[=-1])
Each strip: count run length
encode into modified hufman codes
swap bits
save in byte array
write to image file
*/
ByteArrayOutputStream baos = new ByteArrayOutputStream();
BitSwapOutputStream bsos = new BitSwapOutputStream(baos);
ModHuffmanOutputStream mhos = new ModHuffmanOutputStream(bsos);
RLEOutputStream rlos =
new RLEOutputStream(mhos, 3); // rgb = 3 bytes per sample code word (not needed here)
for (int i = 0; i < maxrps; i++) {
if ((y + i) == height) {
break;
} // last strip might have less rows
rlos.setStartCodeWord(-1); // white run first
for (int x = 0; x < width; x++) {
rlos.write(image.getRGB(x, y + i));
}
rlos.flush(); // write padding after ever image row
}
rlos.close();
byte[] data = baos.toByteArray();
counts.setCount(index, data.length); // update ifd strip counter array
offsets.setOffset(index, out.getStreamPosition()); // update ifd image data offset array
out.write(data); // write to image stream
index++;
}
return ifd;
} catch (Exception e) {
e.printStackTrace();
throw new IOException(getClass().getName() + ".writeBModHufImage:\n\t" + e.getMessage());
}
}
private IFD writeRGBImage(
ImageOutputStream out, BufferedImage image, int comp, TIFFImageWriteParam param)
throws IOException {
image = convert(image, BufferedImage.TYPE_INT_RGB);
try {
int width = image.getWidth();
int height = image.getHeight();
IFD ifd = new IFD(); // entries need to be in tag order !
ifd.add(new DEFactory.NewSubfileTypeDE(2)); // 254 single page of multipage file
ifd.add(new DEFactory.ImageWidthDE(width)); // 256
ifd.add(new DEFactory.ImageLengthDE(height)); // 257
DEFactory.BitsPerSampleDE bpss = new DEFactory.BitsPerSampleDE(3);
bpss.setBitsPerSample(0, 8); // red
bpss.setBitsPerSample(1, 8); // green
bpss.setBitsPerSample(2, 8); // blue
ifd.add(bpss); // 258
ifd.add(new DEFactory.CompressionDE(comp)); // 259
ifd.add(new DEFactory.PhotometricInterpretationDE(RGB)); // 262
int maxrps, maxstripes; // max RowsPerStrip
if ((1 << 13) <= width) {
maxrps = 1;
maxstripes = height; // one row per strip
} else {
maxrps = (1 << 13) / width;
maxstripes = (height + maxrps - 1) / maxrps;
}
if (comp == JPEG) {
maxrps = ((maxrps + 8 - 1) / 8) * 8;
maxstripes = (height + maxrps - 1) / maxrps;
}
DEFactory.StripOffsetsDE offsets = new DEFactory.StripOffsetsDE(maxstripes);
ifd.add(offsets); // 273
ifd.add(new DEFactory.SamplesPerPixelDE(3)); // 277
ifd.add(new DEFactory.RowsPerStripDE(maxrps)); // 278
DEFactory.StripByteCountsDE counts = new DEFactory.StripByteCountsDE(maxstripes);
ifd.add(counts); // 279
if (param == null) {
ifd.add(new DEFactory.XResolutionDE(72.0)); // 282
ifd.add(new DEFactory.YResolutionDE(72.0)); // 283
} else {
ifd.add(new DEFactory.XResolutionDE(param.getXResolution())); // 282
ifd.add(new DEFactory.YResolutionDE(param.getYResolution())); // 283
}
ifd.add(new DEFactory.ResolutionUnitDE(Inch)); // 296
ByteArrayOutputStream baos = new ByteArrayOutputStream();
OutputStream os = baos;
JPEGOutputStream jpegos = null;
if (comp == JPEG) { // add JPEGTables tag
jpegos = new JPEGOutputStream(baos);
int quality = (param == null) ? 50 : (int) (param.getCompressionQuality() * 100);
jpegos.setZZQuantizationTable(0, JPEGConstants.LQT, quality);
jpegos.setRawDCHuffmanTable(0, JPEGConstants.HLDCTable);
jpegos.setRawACHuffmanTable(0, JPEGConstants.HLACTable);
jpegos.defineQuantizationTables();
jpegos.defineHuffmanTables();
jpegos.close();
DEFactory.JPEGTablesDE jpegtables = new DEFactory.JPEGTablesDE(baos.toByteArray());
ifd.add(jpegtables); // 347
baos.reset();
os = jpegos;
}
WritableRaster raster = image.getRaster();
DataBufferInt buffer = (DataBufferInt) raster.getDataBuffer();
int[] imgdata = (int[]) buffer.getData();
int index = 0;
for (int y = 0; y < height; y += maxrps) {
/*
Assume rgb image.
Each strip: evaluate r g b colour
save in byte array
write to image file
*/
if ((height - y) < maxrps) {
maxrps = height - y;
}
if (jpegos != null) { // jpeg: SOI,SOF,SOS marker
jpegos.startOfImage();
int[] hv = {0x11, 0x11, 0x11}; // (Hi<<4)|Vi
int[] q = {0, 0, 0}; // quantization table 0
jpegos.startOfFrame(maxrps, width, hv, q);
int[] sel = {0, 0, 0}; // DC,AC code table 0
jpegos.startOfScan(sel);
}
for (int i = 0; i < maxrps; i++) { // write RGB data
for (int x = 0; x < width; x++) {
int c = imgdata[x + (y + i) * width];
os.write((c >> 16) & 0x000000FF);
os.write((c >> 8) & 0x000000FF);
os.write(c & 0x000000FF);
}
}
os.close(); // jpeg: EOI marker
byte[] data = baos.toByteArray();
counts.setCount(index, data.length); // update ifd strip counter array
offsets.setOffset(index, out.getStreamPosition()); // update ifd image data offset array
out.write(data); // write to image stream
baos.reset();
index++;
}
return ifd;
} catch (Exception e) {
e.printStackTrace();
throw new IOException(getClass().getName() + ".writeRGBImage:\n\t" + e.getMessage());
}
}
/**
* Convert an image to RGB.
*
* @param inFile the file to convert.
* @param outFile the output file, which may be same as inFile.
* @return the static status result
*/
public static AnonymizerStatus convert(File inFile, File outFile) {
long fileLength = inFile.length();
logger.debug("Entering DICOMPaletteImageConverter.convert");
logger.debug("File length = " + fileLength);
BufferedInputStream in = null;
BufferedOutputStream out = null;
File tempFile = null;
byte[] buffer = new byte[4096];
try {
// Check that this is a known format.
in = new BufferedInputStream(new FileInputStream(inFile));
DcmParser parser = pFact.newDcmParser(in);
FileFormat fileFormat = parser.detectFileFormat();
if (fileFormat == null) {
throw new IOException("Unrecognized file format: " + inFile);
}
// Get the dataset (excluding pixels) and leave the input stream open
Dataset dataset = oFact.newDataset();
parser.setDcmHandler(dataset.getDcmHandler());
parser.parseDcmFile(fileFormat, Tags.PixelData);
// Make sure this is an image
if (parser.getReadTag() != Tags.PixelData) {
close(in);
return AnonymizerStatus.SKIP(inFile, "Not an image");
}
// Get the required parameters and make sure they are okay
int numberOfFrames = getInt(dataset, Tags.NumberOfFrames, 1);
int rows = getInt(dataset, Tags.Rows, 0);
int columns = getInt(dataset, Tags.Columns, 0);
String photometricInterpretation = getString(dataset, Tags.PhotometricInterpretation, "");
if ((rows == 0) || (columns == 0)) {
close(in);
return AnonymizerStatus.SKIP(inFile, "Unable to get the rows and columns");
}
if (!photometricInterpretation.equals("PALETTE COLOR")) {
close(in);
return AnonymizerStatus.SKIP(
inFile, "Unsupported PhotometricInterpretation: " + photometricInterpretation);
}
if (parser.getReadTag() != Tags.PixelData) {
close(in);
return AnonymizerStatus.SKIP(inFile, "No pixels");
}
// Get the encoding and set the parameters
DcmDecodeParam fileParam = parser.getDcmDecodeParam();
String fileEncodingUID = UIDs.ImplicitVRLittleEndian;
FileMetaInfo fmi = dataset.getFileMetaInfo();
if (fmi != null) fileEncodingUID = fmi.getTransferSyntaxUID();
boolean isBigEndian = fileEncodingUID.equals(UIDs.ExplicitVRBigEndian);
String encodingUID = UIDs.ExplicitVRLittleEndian;
DcmEncodeParam encoding = (DcmEncodeParam) DcmDecodeParam.valueOf(encodingUID);
boolean swap = (fileParam.byteOrder != encoding.byteOrder);
if (encoding.encapsulated) {
logger.debug("Encapsulated pixel data found");
close(in);
return AnonymizerStatus.SKIP(inFile, "Encapsulated pixel data not supported");
}
// Get the LUTs
LUT red =
new LUT(
dataset.getInts(Tags.RedPaletteColorLUTDescriptor),
dataset.getInts(Tags.RedPaletteColorLUTData));
LUT green =
new LUT(
dataset.getInts(Tags.GreenPaletteColorLUTDescriptor),
dataset.getInts(Tags.GreenPaletteColorLUTData));
LUT blue =
new LUT(
dataset.getInts(Tags.BluePaletteColorLUTDescriptor),
dataset.getInts(Tags.BluePaletteColorLUTData));
// Set the PlanarConfiguration to 0
dataset.putUS(Tags.PlanarConfiguration, 0);
// Set the PhotometricInterpretation to RGB
dataset.putCS(Tags.PhotometricInterpretation, "RGB");
// Set the pixel parameters
dataset.putUS(Tags.SamplesPerPixel, 3);
dataset.putUS(Tags.BitsAllocated, 8);
dataset.putUS(Tags.BitsStored, 8);
dataset.putUS(Tags.HighBit, 7);
// Remove the lookup tables and their descriptors
dataset.remove(Tags.RedPaletteColorLUTDescriptor);
dataset.remove(Tags.GreenPaletteColorLUTDescriptor);
dataset.remove(Tags.BluePaletteColorLUTDescriptor);
dataset.remove(Tags.RedPaletteColorLUTData);
dataset.remove(Tags.GreenPaletteColorLUTData);
dataset.remove(Tags.BluePaletteColorLUTData);
// Save the dataset to a temporary file, and rename at the end.
File tempDir = outFile.getParentFile();
tempFile = File.createTempFile("DCMtemp-", ".anon", tempDir);
out = new BufferedOutputStream(new FileOutputStream(tempFile));
// Create and write the metainfo for the encoding we are using
fmi = oFact.newFileMetaInfo(dataset, encodingUID);
dataset.setFileMetaInfo(fmi);
fmi.write(out);
// Write the dataset as far as was parsed
dataset.writeDataset(out, encoding);
// Process the pixels
int nPixels = numberOfFrames * rows * columns;
int nPixelBytes = nPixels * 3 /*samplesPerPixel*/;
int pad = nPixelBytes & 1;
dataset.writeHeader(out, encoding, parser.getReadTag(), VRs.OB, nPixelBytes + pad);
int pd;
int b1, b2;
int bytesPerFrame = rows * columns * 2;
byte[] frameBytes = new byte[bytesPerFrame];
for (int frame = 0; frame < numberOfFrames; frame++) {
if (in.read(frameBytes, 0, frameBytes.length) != bytesPerFrame)
throw new Exception("End of File");
for (int p = 0; p < bytesPerFrame; ) {
b1 = frameBytes[p++];
b2 = frameBytes[p++];
if (!swap) {
pd = ((b2 & 0xff) << 8) | (b1 & 0xff);
} else {
pd = ((b1 & 0xff) << 8) | (b2 & 0xff);
}
out.write(red.get(pd));
out.write(green.get(pd));
out.write(blue.get(pd));
}
}
if (pad != 0) out.write(0);
logger.debug("Finished writing the pixels");
// Skip everything after the pixels
out.flush();
out.close();
in.close();
outFile.delete();
tempFile.renameTo(outFile);
return AnonymizerStatus.OK(outFile, "");
} catch (Exception e) {
logger.debug("Exception while processing image.", e);
// Close the input stream if it actually got opened.
close(in);
// Close the output stream if it actually got opened,
// and delete the tempFile in case it is still there.
try {
if (out != null) {
out.close();
tempFile.delete();
}
} catch (Exception ex) {
logger.warn("Unable to close the output stream.");
}
// Quarantine the object
return AnonymizerStatus.QUARANTINE(inFile, e.getMessage());
}
}