/**
* Cr�e une nouvelle instance de CreeTrans
*
* @param mf fenetre principale de l'application
* @param zg Zone graphique
* @param auto automate
* @param be barre d'�tat
*/
public TransCreator(MainFrame mf, GraphicZone g, Automate auto, StateBar be) {
super(JOptionPane.getFrameForComponent(mf), "Creating interaction", true);
this.setResizable(false);
this.gz = g;
this.auto = auto;
this.bar = be;
this.mf = mf;
be.displayInfo("Creating interaction");
tfJPanel1 = new JPanel(new FlowLayout(FlowLayout.LEFT));
tfJPanel1.setBackground(Color.lightGray);
tfJPanel1.add(new JLabel("Type : "));
groupe = new CheckboxGroup();
plus = new Checkbox("activator", groupe, true);
tfJPanel1.add(plus);
minus = new Checkbox("inhibitor", groupe, false);
tfJPanel1.add(minus);
tfJPanel2 = new JPanel(new FlowLayout(FlowLayout.LEFT));
tfJPanel2.setBackground(Color.lightGray);
tfJPanel2.add(new JLabel("Threshold = "));
tf = new JTextField(auto.nbrCharTransLabel);
tf.setText("1");
tfJPanel2.add(tf);
btJPanel = new JPanel(new GridLayout(1, 2, 0, 0));
btJPanel.setBackground(Color.lightGray);
ok = new Button("Ok");
ok.setBackground(Color.lightGray);
ok.addActionListener(this);
cancel = new Button("Cancel");
cancel.setBackground(Color.lightGray);
cancel.addActionListener(this);
btJPanel.add(ok);
btJPanel.add(cancel);
content = this.getContentPane();
content.setLayout(new BorderLayout());
content.setBackground(Color.lightGray);
content.add(tfJPanel1, BorderLayout.NORTH);
content.add(tfJPanel2, BorderLayout.CENTER);
content.add(btJPanel, BorderLayout.SOUTH);
this.pack();
this.setLocationRelativeTo(this.mf);
tf.requestFocusInWindow();
// rendre la fenetre visible
setVisible(true);
}
protected void createExeCancDefGroup(final QueryOptionsPack opt, int horizontalSpan) {
// Group for execute, cancel and default buttons
exeCancelDefaultGroup = new Group(shell, SWT.NONE);
GridData gridData = new GridData(GridData.FILL, GridData.CENTER, false, false);
gridData.horizontalSpan = horizontalSpan;
exeCancelDefaultGroup.setLayoutData(gridData);
exeCancelDefaultGroup.setLayout(new GridLayout(4, true));
if (forSIF) {
sifTypeButton = new Button(exeCancelDefaultGroup, SWT.NONE);
sifTypeButton.setBackground(new Color(null, 255, 255, 255));
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
sifTypeButton.setLayoutData(gridData);
sifTypeButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
ArrayList<SIFType> selection = new ArrayList<SIFType>(selectedTypes);
ExportToSIFL3Dialog dialog =
new ExportToSIFL3Dialog(
main.getShell(),
org.gvt.model.sifl3.SIFGraph.getPossibleRuleTypes(),
selection);
if (dialog.open()) {
selectedTypes.clear();
selectedTypes.addAll(selection);
updateSIFTypeButtonText();
}
}
});
if (selectedTypes == null) selectedTypes = new ArrayList<SIFType>();
updateSIFTypeButtonText();
}
// Execute Button
executeButton = new Button(exeCancelDefaultGroup, SWT.NONE);
executeButton.setText("Execute");
gridData = new GridData(GridData.END, GridData.CENTER, true, false);
executeButton.setLayoutData(gridData);
executeButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
// if no entity is added, show error
if ((sourceElg != null && getAddedSourceEntities().isEmpty())
|| (sourceST != null && sourceST.getSymbols().isEmpty())) {
MessageDialog.openError(main.getShell(), "Error!", "Add Source Molecule!");
return;
}
if ((targetElg != null && getAddedTargetEntities().isEmpty())
|| (targetST != null && targetST.getSymbols().isEmpty())) {
MessageDialog.openError(main.getShell(), "Error!", "Add Target Molecule!");
return;
}
if (forSIF && selectedTypes.isEmpty()) {
MessageDialog.openError(
main.getShell(), "Error!", "Please select at least one interaction type.");
return;
}
// Check for unknown gene symbols
java.util.List<String> unkwn = getUnknownSymbols();
if (!unkwn.isEmpty()) {
String s = "";
for (String us : unkwn) s += " " + us;
MessageDialog.openError(
main.getShell(),
"Error!",
"Unknown symbol" + (unkwn.size() > 1 ? "s" : "") + ": " + s);
return;
}
// store values in dialog to optionsPack
storeValuesToOptionsPack(opt);
// execute is selected
opt.setCancel(false);
shell.close();
}
});
// Cancel Button
cancelButton = new Button(exeCancelDefaultGroup, SWT.NONE);
gridData = new GridData(GridData.CENTER, GridData.CENTER, true, false);
createCancelButton(gridData);
// Default Button
defaultButton = new Button(exeCancelDefaultGroup, SWT.NONE);
defaultButton.setText("Default");
gridData = new GridData(GridData.BEGINNING, GridData.CENTER, true, false);
defaultButton.setLayoutData(gridData);
defaultButton.addSelectionListener(
new SelectionAdapter() {
public void widgetSelected(SelectionEvent arg0) {
// set default values of dialog
setDefaultQueryDialogOptions();
}
});
}