static void writeDoc1(Document doc, PrintStream out) throws IOException {
Vector<Annotation> entities = doc.annotationsOfType("entity");
if (entities == null) {
System.err.println("No Entity: " + doc);
return;
}
Iterator<Annotation> entityIt = entities.iterator();
int i = 0;
while (entityIt.hasNext()) {
Annotation entity = entityIt.next();
Vector mentions = (Vector) entity.get("mentions");
Iterator mentionIt = mentions.iterator();
String nameType = (String) entity.get("nameType");
while (mentionIt.hasNext()) {
Annotation mention1 = (Annotation) mentionIt.next();
Annotation mention2 = new Annotation("refobj", mention1.span(), new FeatureSet());
mention2.put("objid", Integer.toString(i));
if (nameType != null) {
mention2.put("netype", nameType);
}
doc.addAnnotation(mention2);
}
i++;
}
// remove other annotations.
String[] annotypes = doc.getAnnotationTypes();
for (i = 0; i < annotypes.length; i++) {
String t = annotypes[i];
if (!(t.equals("tagger") || t.equals("refobj") || t.equals("ENAMEX"))) {
doc.removeAnnotationsOfType(t);
}
}
writeDocRaw(doc, out);
return;
}
/**
* Put the JAIN-SIP stack in a state where it cannot receive any data and frees the network ports
* used. That is to say remove JAIN-SIP <tt>ListeningPoint</tt>s and <tt>SipProvider</tt>s.
*/
@SuppressWarnings("unchecked") // jain-sip legacy code
private void stopListening() {
try {
this.secureJainSipProvider.removeSipListener(this);
this.stack.deleteSipProvider(this.secureJainSipProvider);
this.secureJainSipProvider = null;
this.clearJainSipProvider.removeSipListener(this);
this.stack.deleteSipProvider(this.clearJainSipProvider);
this.clearJainSipProvider = null;
Iterator<ListeningPoint> it = this.stack.getListeningPoints();
Vector<ListeningPoint> lpointsToRemove = new Vector<ListeningPoint>();
while (it.hasNext()) {
lpointsToRemove.add(it.next());
}
it = lpointsToRemove.iterator();
while (it.hasNext()) {
this.stack.deleteListeningPoint(it.next());
}
this.stack.stop();
if (logger.isTraceEnabled()) logger.trace("stopped listening");
} catch (ObjectInUseException ex) {
logger.fatal("Failed to stop listening", ex);
}
}
void writeFiles(Vector allConfigs) {
Hashtable allFiles = computeAttributedFiles(allConfigs);
Vector allConfigNames = new Vector();
for (Iterator i = allConfigs.iterator(); i.hasNext(); ) {
allConfigNames.add(((BuildConfig) i.next()).get("Name"));
}
TreeSet sortedFiles = sortFiles(allFiles);
startTag("Files", null);
for (Iterator i = makeFilters(sortedFiles).iterator(); i.hasNext(); ) {
doWriteFiles(sortedFiles, allConfigNames, (NameFilter) i.next());
}
startTag(
"Filter",
new String[] {
"Name", "Resource Files",
"Filter", "ico;cur;bmp;dlg;rc2;rct;bin;cnt;rtf;gif;jpg;jpeg;jpe"
});
endTag("Filter");
endTag("Files");
}
/**
* This method exports the single pattern decision instance to the XML. It MUST be called by an
* XML exporter, as this will not have a complete header.
*
* @param ratDoc The ratDoc generated by the XML exporter
* @return the SAX representation of the object.
*/
public Element toXML(Document ratDoc) {
Element decisionE;
RationaleDB db = RationaleDB.getHandle();
// Now, add pattern to doc
String entryID = db.getRef(this);
if (entryID == null) {
entryID = db.addPatternDecisionRef(this);
}
decisionE = ratDoc.createElement("DR:patternDecision");
decisionE.setAttribute("rid", entryID);
decisionE.setAttribute("name", name);
decisionE.setAttribute("type", type.toString());
decisionE.setAttribute("phase", devPhase.toString());
decisionE.setAttribute("status", status.toString());
// decisionE.setAttribute("artifact", artifact);
Element descE = ratDoc.createElement("description");
Text descText = ratDoc.createTextNode(description);
descE.appendChild(descText);
decisionE.appendChild(descE);
// Add child pattern references...
Iterator<Pattern> cpi = candidatePatterns.iterator();
while (cpi.hasNext()) {
Pattern cur = cpi.next();
Element curE = ratDoc.createElement("refChildPattern");
Text curText = ratDoc.createTextNode("p" + new Integer(cur.getID()).toString());
curE.appendChild(curText);
decisionE.appendChild(curE);
}
return decisionE;
}
/**
* Reads all of the files in the given directory and adds them as children of the directory tree
* node. Requires that the passed node represents a directory.
*/
private void readDirectory(Node parentNode, File parentDir) {
File[] children = parentDir.listFiles();
if (children == null) return;
if (verbose) {
System.out.print(".");
System.out.flush();
}
for (int i = 0; i < children.length; i++) {
File child = children[i];
children[i] = null;
boolean isDir = child.isDirectory();
boolean mustSkip = false;
if (isDir) {
for (Iterator iter = subdirsToIgnore.iterator(); iter.hasNext(); ) {
if (child.getName().equals((String) iter.next())) {
mustSkip = true;
break;
}
}
}
if (!mustSkip) {
Node childNode = new Node(child);
parentNode.addChild(childNode);
if (isDir) {
readDirectory(childNode, child);
}
}
}
}
protected void layoutFooter(Page page) {
ServletUtil.doLayoutFooter(
page, (footnotes == null ? null : footnotes.iterator()), getLockssApp().getVersionInfo());
if (footnotes != null) {
footnotes.removeAllElements();
}
}
public static String[] parseString(String text, String seperator) {
Vector vResult = new Vector();
if (text == null || "".equals(text)) {
return null;
}
String tempStr = text.trim();
String currentLabel = null;
int index = tempStr.indexOf(seperator);
while (index != -1) {
currentLabel = tempStr.substring(0, index).trim();
if (!"".equals(currentLabel)) {
vResult.addElement(currentLabel);
}
tempStr = tempStr.substring(index + 1);
index = tempStr.indexOf(seperator);
} // Last label
currentLabel = tempStr.trim();
if (!"".equals(currentLabel)) {
vResult.addElement(currentLabel);
}
String[] re = new String[vResult.size()];
Iterator it = vResult.iterator();
index = 0;
while (it.hasNext()) {
re[index] = (String) it.next();
index++;
}
return re;
}
void writeCustomToolConfig(Vector configs, String[] customToolAttrs) {
for (Iterator i = configs.iterator(); i.hasNext(); ) {
startTag("FileConfiguration", new String[] {"Name", (String) i.next()});
tag("Tool", customToolAttrs);
endTag("FileConfiguration");
}
}
/**
* Returns true iff all the files listed in this tracker's dependency list exist and are at the
* same version as when they were recorded.
*
* @return a boolean
*/
boolean isUpToDate(Properties properties) {
Iterator e;
// fixes bug 962
{
if (mProperties.size() != properties.size()) {
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="my size " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(),
"051018-181",
new Object[] {new Integer(mProperties.size())}));
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="new size " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(),
"051018-189",
new Object[] {new Integer(properties.size())}));
return false;
}
for (e = mProperties.keySet().iterator(); e.hasNext(); ) {
String key = (String) e.next();
String val0 = mProperties.getProperty(key);
String val1 = properties.getProperty(key);
// val0 can't be null; properties don't allow that
if (val1 == null || !val0.equals(val1)) {
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="Missing or changed property: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(), "051018-207", new Object[] {val0}));
return false;
}
}
}
for (e = mDependencies.iterator(); e.hasNext(); ) {
FileInfo saved = (FileInfo) e.next();
FileInfo current = new FileInfo(saved.mPathname);
if (!saved.isUpToDate(current)) {
mLogger.debug(saved.mPathname + " has changed");
mLogger.debug("was " + saved.mLastMod);
mLogger.debug(" is " + current.mLastMod);
return false;
}
}
return true;
}
public synchronized TaskReport[] getReduceTaskReports(String jobid) {
JobInProgress job = (JobInProgress) jobs.get(jobid);
if (job == null) {
return new TaskReport[0];
} else {
Vector reports = new Vector();
Vector completeReduceTasks = job.reportTasksInProgress(false, true);
for (Iterator it = completeReduceTasks.iterator(); it.hasNext(); ) {
TaskInProgress tip = (TaskInProgress) it.next();
reports.add(tip.generateSingleReport());
}
Vector incompleteReduceTasks = job.reportTasksInProgress(false, false);
for (Iterator it = incompleteReduceTasks.iterator(); it.hasNext(); ) {
TaskInProgress tip = (TaskInProgress) it.next();
reports.add(tip.generateSingleReport());
}
return (TaskReport[]) reports.toArray(new TaskReport[reports.size()]);
}
}
public void writeProjectFile(String projectFileName, String projectName, Vector allConfigs)
throws IOException {
System.out.println();
System.out.println(" Writing .vcproj file...");
// If we got this far without an error, we're safe to actually
// write the .vcproj file
printWriter = new PrintWriter(new FileWriter(projectFileName));
printWriter.println("<?xml version=\"1.0\" encoding=\"windows-1251\"?>");
startTag(
"VisualStudioProject",
new String[] {
"ProjectType", "Visual C++",
"Version", projectVersion(),
"Name", projectName,
"ProjectGUID", "{8822CB5C-1C41-41C2-8493-9F6E1994338B}",
"SccProjectName", "",
"SccLocalPath", ""
});
startTag("Platforms", null);
tag("Platform", new String[] {"Name", Util.os});
endTag("Platforms");
startTag("Configurations", null);
for (Iterator i = allConfigs.iterator(); i.hasNext(); ) {
writeConfiguration((BuildConfig) i.next());
}
endTag("Configurations");
tag("References", null);
writeFiles(allConfigs);
tag("Globals", null);
endTag("VisualStudioProject");
printWriter.close();
System.out.println(" Done.");
}
/**
* Get a listing of files given path 'src'
*
* <p>This function is admittedly very inefficient right now. We'll make it better later.
*/
public DFSFileInfo[] getListing(UTF8 src) {
String srcs = normalizePath(src);
synchronized (rootDir) {
INode targetNode = rootDir.getNode(srcs);
if (targetNode == null) {
return null;
} else {
Vector contents = new Vector();
targetNode.listContents(contents);
DFSFileInfo listing[] = new DFSFileInfo[contents.size()];
int i = 0;
for (Iterator it = contents.iterator(); it.hasNext(); i++) {
listing[i] = new DFSFileInfo((INode) it.next());
}
return listing;
}
}
}
/**
* This will update the FileInfo object chain to use the (possibly new) webappPath once the
* DependencyTracker object has been reconstitutded from ondisk cache.
*/
void updateWebappPath() {
String webappPath = LPS.HOME(); // get it from global
if (webappPath.equals(mWebappPath)) return;
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="updating webappPath from: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(), "051018-128", new Object[] {mWebappPath}));
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="updating webappPath to: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(), "051018-136", new Object[] {webappPath}));
for (Iterator e = mDependencies.iterator(); e.hasNext(); ) {
FileInfo saved = (FileInfo) e.next();
if (saved.mPathname.startsWith(mWebappPath)) {
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="updating dependencies from: " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(), "051018-147", new Object[] {saved.mPathname}));
saved.mPathname = webappPath + saved.mPathname.substring(mWebappPath.length());
mLogger.debug(
/* (non-Javadoc)
* @i18n.test
* @org-mes="updating dependencies to : " + p[0]
*/
org.openlaszlo.i18n.LaszloMessages.getMessage(
DependencyTracker.class.getName(), "051018-157", new Object[] {saved.mPathname}));
}
}
mWebappPath = webappPath;
}
Block[] unprotectedDelete(UTF8 src) {
synchronized (rootDir) {
INode targetNode = rootDir.getNode(src.toString());
if (targetNode == null) {
return null;
} else {
//
// Remove the node from the namespace and GC all
// the blocks underneath the node.
//
if (!targetNode.removeNode()) {
return null;
} else {
Vector v = new Vector();
targetNode.collectSubtreeBlocks(v);
for (Iterator it = v.iterator(); it.hasNext(); ) {
Block b = (Block) it.next();
activeBlocks.remove(b);
}
return (Block[]) v.toArray(new Block[v.size()]);
}
}
}
}
/**
* A tracker wants to know if there's a Task to run. Returns a task we'd like the TaskTracker to
* execute right now.
*
* <p>Eventually this function should compute load on the various TaskTrackers, and incorporate
* knowledge of DFS file placement. But for right now, it just grabs a single item out of the
* pending task list and hands it back.
*/
public synchronized Task pollForNewTask(String taskTracker) {
//
// Compute average map and reduce task numbers across pool
//
int avgMaps = 0;
int avgReduces = 0;
int numTaskTrackers;
TaskTrackerStatus tts;
synchronized (taskTrackers) {
numTaskTrackers = taskTrackers.size();
tts = (TaskTrackerStatus) taskTrackers.get(taskTracker);
}
if (numTaskTrackers > 0) {
avgMaps = totalMaps / numTaskTrackers;
avgReduces = totalReduces / numTaskTrackers;
}
int totalCapacity = numTaskTrackers * maxCurrentTasks;
//
// Get map + reduce counts for the current tracker.
//
if (tts == null) {
LOG.warning("Unknown task tracker polling; ignoring: " + taskTracker);
return null;
}
int numMaps = tts.countMapTasks();
int numReduces = tts.countReduceTasks();
//
// In the below steps, we allocate first a map task (if appropriate),
// and then a reduce task if appropriate. We go through all jobs
// in order of job arrival; jobs only get serviced if their
// predecessors are serviced, too.
//
//
// We hand a task to the current taskTracker if the given machine
// has a workload that's equal to or less than the averageMaps
// +/- TASK_ALLOC_EPSILON. (That epsilon is in place in case
// there is an odd machine that is failing for some reason but
// has not yet been removed from the pool, making capacity seem
// larger than it really is.)
//
synchronized (jobsByArrival) {
if ((numMaps < maxCurrentTasks) && (numMaps <= (avgMaps + TASK_ALLOC_EPSILON))) {
int totalNeededMaps = 0;
for (Iterator it = jobsByArrival.iterator(); it.hasNext(); ) {
JobInProgress job = (JobInProgress) it.next();
if (job.getStatus().getRunState() != JobStatus.RUNNING) {
continue;
}
Task t = job.obtainNewMapTask(taskTracker, tts);
if (t != null) {
return t;
}
//
// Beyond the highest-priority task, reserve a little
// room for failures and speculative executions; don't
// schedule tasks to the hilt.
//
totalNeededMaps += job.desiredMaps();
double padding = 0;
if (totalCapacity > MIN_SLOTS_FOR_PADDING) {
padding = Math.min(maxCurrentTasks, totalNeededMaps * PAD_FRACTION);
}
if (totalNeededMaps + padding >= totalCapacity) {
break;
}
}
}
//
// Same thing, but for reduce tasks
//
if ((numReduces < maxCurrentTasks) && (numReduces <= (avgReduces + TASK_ALLOC_EPSILON))) {
int totalNeededReduces = 0;
for (Iterator it = jobsByArrival.iterator(); it.hasNext(); ) {
JobInProgress job = (JobInProgress) it.next();
if (job.getStatus().getRunState() != JobStatus.RUNNING) {
continue;
}
Task t = job.obtainNewReduceTask(taskTracker, tts);
if (t != null) {
return t;
}
//
// Beyond the highest-priority task, reserve a little
// room for failures and speculative executions; don't
// schedule tasks to the hilt.
//
totalNeededReduces += job.desiredReduces();
double padding = 0;
if (totalCapacity > MIN_SLOTS_FOR_PADDING) {
padding = Math.min(maxCurrentTasks, totalNeededReduces * PAD_FRACTION);
}
if (totalNeededReduces + padding >= totalCapacity) {
break;
}
}
}
}
return null;
}
public Iterator<Integer> iteratorSubPatterns() {
return subPatternsID.iterator();
}
public Iterator getChildren() throws IllegalArgumentException {
return children.iterator();
}
void doWriteFiles(TreeSet allFiles, Vector allConfigNames, NameFilter filter) {
startTag(
"Filter",
new String[] {
"Name", filter.name(),
"Filter", filter.filterString()
});
if (filter instanceof ContainerFilter) {
Iterator i = ((ContainerFilter) filter).babies();
while (i.hasNext()) {
doWriteFiles(allFiles, allConfigNames, (NameFilter) i.next());
}
} else {
Iterator i = allFiles.iterator();
while (i.hasNext()) {
FileInfo fi = (FileInfo) i.next();
if (!filter.match(fi)) {
continue;
}
startTag("File", new String[] {"RelativePath", fi.full.replace('/', '\\')});
FileAttribute a = fi.attr;
if (a.pchRoot) {
writeCustomToolConfig(
allConfigNames,
new String[] {
"Name", "VCCLCompilerTool",
"UsePrecompiledHeader", "1"
});
}
if (a.noPch) {
writeCustomToolConfig(
allConfigNames,
new String[] {
"Name", "VCCLCompilerTool",
"UsePrecompiledHeader", "0"
});
}
if (a.configs != null) {
for (Iterator j = allConfigNames.iterator(); j.hasNext(); ) {
String cfg = (String) j.next();
if (!a.configs.contains(cfg)) {
startTag(
"FileConfiguration", new String[] {"Name", cfg, "ExcludedFromBuild", "TRUE"});
tag("Tool", new String[] {"Name", "VCCLCompilerTool"});
endTag("FileConfiguration");
}
}
}
endTag("File");
// we not gonna look at this file anymore
i.remove();
}
}
endTag("Filter");
}
Iterator babies() {
return children.iterator();
}