public void map(
LongWritable key, Point value, OutputCollector<LongWritable, Point> output, Reporter reporter)
throws IOException {
double min = value.sumOfSquares(centers.get(0));
int best = 0;
for (int index = 1; index < numberOfCenters; ++index) {
double current = value.sumOfSquares(centers.get(index));
if (current < min) {
min = current;
best = index;
}
}
reporter.incrCounter("NUMBER", "NODES", 1);
reporter.incrCounter("CENTER", "" + best, 1);
output.collect(new LongWritable(best), value);
}
/**
* Map method. Copies one file from source file system to destination.
*
* @param key src len
* @param value FilePair (FileStatus src, Path dst)
* @param out Log of failed copies
* @param reporter
*/
public void map(
LongWritable key,
FilePair value,
OutputCollector<WritableComparable<?>, Text> out,
Reporter reporter)
throws IOException {
final FileStatus srcstat = value.input;
final Path relativedst = new Path(value.output);
try {
copy(srcstat, relativedst, out, reporter);
} catch (IOException e) {
++failcount;
reporter.incrCounter(Counter.FAIL, 1);
updateStatus(reporter);
final String sfailure = "FAIL " + relativedst + " : " + StringUtils.stringifyException(e);
out.collect(null, new Text(sfailure));
LOG.info(sfailure);
try {
for (int i = 0; i < 3; ++i) {
try {
final Path tmp = new Path(job.get(TMP_DIR_LABEL), relativedst);
if (destFileSys.delete(tmp, true)) break;
} catch (Throwable ex) {
// ignore, we are just cleaning up
LOG.debug("Ignoring cleanup exception", ex);
}
// update status, so we don't get timed out
updateStatus(reporter);
Thread.sleep(3 * 1000);
}
} catch (InterruptedException inte) {
throw (IOException) new IOException().initCause(inte);
}
} finally {
updateStatus(reporter);
}
}
/**
* Copy a file to a destination.
*
* @param srcstat src path and metadata
* @param dstpath dst path
* @param reporter
*/
private void copy(
FileStatus srcstat,
Path relativedst,
OutputCollector<WritableComparable<?>, Text> outc,
Reporter reporter)
throws IOException {
Path absdst = new Path(destPath, relativedst);
int totfiles = job.getInt(SRC_COUNT_LABEL, -1);
assert totfiles >= 0 : "Invalid file count " + totfiles;
// if a directory, ensure created even if empty
if (srcstat.isDir()) {
if (destFileSys.exists(absdst)) {
if (!destFileSys.getFileStatus(absdst).isDir()) {
throw new IOException("Failed to mkdirs: " + absdst + " is a file.");
}
} else if (!destFileSys.mkdirs(absdst)) {
throw new IOException("Failed to mkdirs " + absdst);
}
// TODO: when modification times can be set, directories should be
// emitted to reducers so they might be preserved. Also, mkdirs does
// not currently return an error when the directory already exists;
// if this changes, all directory work might as well be done in reduce
return;
}
if (destFileSys.exists(absdst) && !overwrite && !needsUpdate(srcstat, destFileSys, absdst)) {
outc.collect(null, new Text("SKIP: " + srcstat.getPath()));
++skipcount;
reporter.incrCounter(Counter.SKIP, 1);
updateStatus(reporter);
return;
}
Path tmpfile = new Path(job.get(TMP_DIR_LABEL), relativedst);
long cbcopied = 0L;
FSDataInputStream in = null;
FSDataOutputStream out = null;
try {
// open src file
try {
in = srcstat.getPath().getFileSystem(job).open(srcstat.getPath());
} catch (IOException e) {
LOG.error("Failed to open src file " + srcstat.getPath() + ", ignore and return");
in = null;
return;
}
reporter.incrCounter(Counter.BYTESEXPECTED, srcstat.getLen());
// open tmp file
out = create(tmpfile, reporter, srcstat);
// copy file
for (int cbread; (cbread = in.read(buffer)) >= 0; ) {
out.write(buffer, 0, cbread);
cbcopied += cbread;
reporter.setStatus(
String.format("%.2f ", cbcopied * 100.0 / srcstat.getLen())
+ absdst
+ " [ "
+ StringUtils.humanReadableInt(cbcopied)
+ " / "
+ StringUtils.humanReadableInt(srcstat.getLen())
+ " ]");
}
} finally {
checkAndClose(in);
checkAndClose(out);
}
if (cbcopied != srcstat.getLen()) {
if (srcstat.getLen() == 0 && cbcopied > 0) {
LOG.info("most likely see a WAL file corruption: " + srcstat.getPath());
} else {
throw new IOException(
"File size not matched: copied "
+ bytesString(cbcopied)
+ " to tmpfile (="
+ tmpfile
+ ") but expected "
+ bytesString(srcstat.getLen())
+ " from "
+ srcstat.getPath());
}
} else {
if (totfiles == 1) {
// Copying a single file; use dst path provided by user as destination
// rather than destination directory, if a file
Path dstparent = absdst.getParent();
if (!(destFileSys.exists(dstparent) && destFileSys.getFileStatus(dstparent).isDir())) {
absdst = dstparent;
}
}
if (destFileSys.exists(absdst) && destFileSys.getFileStatus(absdst).isDir()) {
throw new IOException(absdst + " is a directory");
}
if (!destFileSys.mkdirs(absdst.getParent())) {
throw new IOException("Failed to craete parent dir: " + absdst.getParent());
}
rename(tmpfile, absdst);
FileStatus dststat = destFileSys.getFileStatus(absdst);
if (dststat.getLen() != srcstat.getLen()) {
destFileSys.delete(absdst, false);
throw new IOException(
"File size not matched: copied "
+ bytesString(dststat.getLen())
+ " to dst (="
+ absdst
+ ") but expected "
+ bytesString(srcstat.getLen())
+ " from "
+ srcstat.getPath());
}
updatePermissions(srcstat, dststat);
}
// report at least once for each file
++copycount;
reporter.incrCounter(Counter.BYTESCOPIED, cbcopied);
reporter.incrCounter(Counter.COPY, 1);
updateStatus(reporter);
}