public void inject(Path crawlDb, Path urlDir) throws IOException {
SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss");
long start = System.currentTimeMillis();
if (LOG.isInfoEnabled()) {
LOG.info("Injector: starting at " + sdf.format(start));
LOG.info("Injector: crawlDb: " + crawlDb);
LOG.info("Injector: urlDir: " + urlDir);
}
Path tempDir =
new Path(
getConf().get("mapred.temp.dir", ".")
+ "/inject-temp-"
+ Integer.toString(new Random().nextInt(Integer.MAX_VALUE)));
// map text input file to a <url,CrawlDatum> file
if (LOG.isInfoEnabled()) {
LOG.info("Injector: Converting injected urls to crawl db entries.");
}
JobConf sortJob = new NutchJob(getConf());
sortJob.setJobName("inject " + urlDir);
FileInputFormat.addInputPath(sortJob, urlDir);
sortJob.setMapperClass(InjectMapper.class);
FileOutputFormat.setOutputPath(sortJob, tempDir);
sortJob.setOutputFormat(SequenceFileOutputFormat.class);
sortJob.setOutputKeyClass(Text.class);
sortJob.setOutputValueClass(CrawlDatum.class);
sortJob.setLong("injector.current.time", System.currentTimeMillis());
RunningJob mapJob = JobClient.runJob(sortJob);
long urlsInjected = mapJob.getCounters().findCounter("injector", "urls_injected").getValue();
long urlsFiltered = mapJob.getCounters().findCounter("injector", "urls_filtered").getValue();
LOG.info("Injector: total number of urls rejected by filters: " + urlsFiltered);
LOG.info(
"Injector: total number of urls injected after normalization and filtering: "
+ urlsInjected);
// merge with existing crawl db
if (LOG.isInfoEnabled()) {
LOG.info("Injector: Merging injected urls into crawl db.");
}
JobConf mergeJob = CrawlDb.createJob(getConf(), crawlDb);
FileInputFormat.addInputPath(mergeJob, tempDir);
mergeJob.setReducerClass(InjectReducer.class);
JobClient.runJob(mergeJob);
CrawlDb.install(mergeJob, crawlDb);
// clean up
FileSystem fs = FileSystem.get(getConf());
fs.delete(tempDir, true);
long end = System.currentTimeMillis();
LOG.info(
"Injector: finished at "
+ sdf.format(end)
+ ", elapsed: "
+ TimingUtil.elapsedTime(start, end));
}
/**
* Driver to copy srcPath to destPath depending on required protocol.
*
* @param args arguments
*/
static void copy(final Configuration conf, final Arguments args) throws IOException {
LOG.info("srcPaths=" + args.srcs);
LOG.info("destPath=" + args.dst);
checkSrcPath(conf, args.srcs);
JobConf job = createJobConf(conf);
if (args.preservedAttributes != null) {
job.set(PRESERVE_STATUS_LABEL, args.preservedAttributes);
}
if (args.mapredSslConf != null) {
job.set("dfs.https.client.keystore.resource", args.mapredSslConf);
}
// Initialize the mapper
try {
setup(conf, job, args);
JobClient.runJob(job);
finalize(conf, job, args.dst, args.preservedAttributes);
} finally {
// delete tmp
fullyDelete(job.get(TMP_DIR_LABEL), job);
// delete jobDirectory
fullyDelete(job.get(JOB_DIR_LABEL), job);
}
}
public int run(String[] args) throws Exception {
JobConf conf = new JobConf(getConf(), XiangLi1_exercise3.class);
conf.setJobName("xiangli1_exercise3");
conf.setNumReduceTasks(0);
conf.setOutputKeyClass(Text.class);
conf.setOutputValueClass(Text.class);
conf.setMapperClass(Map.class);
// conf.setCombinerClass(Reduce.class);
// conf.setReducerClass(Reduce.class);
conf.setInputFormat(TextInputFormat.class);
conf.setOutputFormat(TextOutputFormat.class);
FileInputFormat.setInputPaths(conf, new Path(args[0]));
FileOutputFormat.setOutputPath(conf, new Path(args[1]));
JobClient.runJob(conf);
return 0;
}
@Override
public int run(String[] args) throws Exception {
Configuration conf = getConf();
FileSystem fs = FileSystem.get(conf);
JobConf job = new JobConf(conf);
job.setJarByClass(Jacobi.class);
fs.delete(new Path("curX"), true);
job.setInputFormat(TextInputFormat.class);
job.setOutputFormat(TextOutputFormat.class);
job.setMapperClass(Map.class);
job.setReducerClass(Reduce.class);
job.setOutputKeyClass(IntWritable.class);
job.setOutputValueClass(DoubleWritable.class);
FileInputFormat.setInputPaths(job, new Path("preX"));
FileOutputFormat.setOutputPath(job, new Path("curX"));
JobClient.runJob(job);
return 1;
}
/**
* Initialize DFSCopyFileMapper specific job-configuration.
*
* @param conf : The dfs/mapred configuration.
* @param jobConf : The handle to the jobConf object to be initialized.
* @param args Arguments
*/
private static void setup(Configuration conf, JobConf jobConf, final Arguments args)
throws IOException {
jobConf.set(DST_DIR_LABEL, args.dst.toUri().toString());
// set boolean values
final boolean update = args.flags.contains(Options.UPDATE);
final boolean overwrite = !update && args.flags.contains(Options.OVERWRITE);
jobConf.setBoolean(Options.UPDATE.propertyname, update);
jobConf.setBoolean(Options.OVERWRITE.propertyname, overwrite);
jobConf.setBoolean(
Options.IGNORE_READ_FAILURES.propertyname,
args.flags.contains(Options.IGNORE_READ_FAILURES));
jobConf.setBoolean(
Options.PRESERVE_STATUS.propertyname, args.flags.contains(Options.PRESERVE_STATUS));
final String randomId = getRandomId();
JobClient jClient = new JobClient(jobConf);
Path jobDirectory = new Path(jClient.getSystemDir(), NAME + "_" + randomId);
jobConf.set(JOB_DIR_LABEL, jobDirectory.toString());
FileSystem dstfs = args.dst.getFileSystem(conf);
boolean dstExists = dstfs.exists(args.dst);
boolean dstIsDir = false;
if (dstExists) {
dstIsDir = dstfs.getFileStatus(args.dst).isDir();
}
// default logPath
Path logPath = args.log;
if (logPath == null) {
String filename = "_distcp_logs_" + randomId;
if (!dstExists || !dstIsDir) {
Path parent = args.dst.getParent();
if (!dstfs.exists(parent)) {
dstfs.mkdirs(parent);
}
logPath = new Path(parent, filename);
} else {
logPath = new Path(args.dst, filename);
}
}
FileOutputFormat.setOutputPath(jobConf, logPath);
// create src list, dst list
FileSystem jobfs = jobDirectory.getFileSystem(jobConf);
Path srcfilelist = new Path(jobDirectory, "_distcp_src_files");
jobConf.set(SRC_LIST_LABEL, srcfilelist.toString());
SequenceFile.Writer src_writer =
SequenceFile.createWriter(
jobfs,
jobConf,
srcfilelist,
LongWritable.class,
FilePair.class,
SequenceFile.CompressionType.NONE);
Path dstfilelist = new Path(jobDirectory, "_distcp_dst_files");
SequenceFile.Writer dst_writer =
SequenceFile.createWriter(
jobfs, jobConf, dstfilelist, Text.class, Text.class, SequenceFile.CompressionType.NONE);
Path dstdirlist = new Path(jobDirectory, "_distcp_dst_dirs");
jobConf.set(DST_DIR_LIST_LABEL, dstdirlist.toString());
SequenceFile.Writer dir_writer =
SequenceFile.createWriter(
jobfs,
jobConf,
dstdirlist,
Text.class,
FilePair.class,
SequenceFile.CompressionType.NONE);
// handle the case where the destination directory doesn't exist
// and we've only a single src directory OR we're updating/overwriting
// the contents of the destination directory.
final boolean special = (args.srcs.size() == 1 && !dstExists) || update || overwrite;
int srcCount = 0, cnsyncf = 0, dirsyn = 0;
long fileCount = 0L, byteCount = 0L, cbsyncs = 0L;
try {
for (Iterator<Path> srcItr = args.srcs.iterator(); srcItr.hasNext(); ) {
final Path src = srcItr.next();
FileSystem srcfs = src.getFileSystem(conf);
FileStatus srcfilestat = srcfs.getFileStatus(src);
Path root = special && srcfilestat.isDir() ? src : src.getParent();
if (srcfilestat.isDir()) {
++srcCount;
}
Stack<FileStatus> pathstack = new Stack<FileStatus>();
for (pathstack.push(srcfilestat); !pathstack.empty(); ) {
FileStatus cur = pathstack.pop();
FileStatus[] children = srcfs.listStatus(cur.getPath());
for (int i = 0; i < children.length; i++) {
boolean skipfile = false;
final FileStatus child = children[i];
final String dst = makeRelative(root, child.getPath());
++srcCount;
if (child.isDir()) {
pathstack.push(child);
} else {
// skip file if the src and the dst files are the same.
skipfile = update && sameFile(srcfs, child, dstfs, new Path(args.dst, dst));
// skip file if it exceed file limit or size limit
skipfile |=
fileCount == args.filelimit || byteCount + child.getLen() > args.sizelimit;
if (!skipfile) {
++fileCount;
byteCount += child.getLen();
if (LOG.isTraceEnabled()) {
LOG.trace("adding file " + child.getPath());
}
++cnsyncf;
cbsyncs += child.getLen();
if (cnsyncf > SYNC_FILE_MAX || cbsyncs > BYTES_PER_MAP) {
src_writer.sync();
dst_writer.sync();
cnsyncf = 0;
cbsyncs = 0L;
}
}
}
if (!skipfile) {
src_writer.append(
new LongWritable(child.isDir() ? 0 : child.getLen()), new FilePair(child, dst));
}
dst_writer.append(new Text(dst), new Text(child.getPath().toString()));
}
if (cur.isDir()) {
String dst = makeRelative(root, cur.getPath());
dir_writer.append(new Text(dst), new FilePair(cur, dst));
if (++dirsyn > SYNC_FILE_MAX) {
dirsyn = 0;
dir_writer.sync();
}
}
}
}
} finally {
checkAndClose(src_writer);
checkAndClose(dst_writer);
checkAndClose(dir_writer);
}
FileStatus dststatus = null;
try {
dststatus = dstfs.getFileStatus(args.dst);
} catch (FileNotFoundException fnfe) {
LOG.info(args.dst + " does not exist.");
}
// create dest path dir if copying > 1 file
if (dststatus == null) {
if (srcCount > 1 && !dstfs.mkdirs(args.dst)) {
throw new IOException("Failed to create" + args.dst);
}
}
final Path sorted = new Path(jobDirectory, "_distcp_sorted");
checkDuplication(jobfs, dstfilelist, sorted, conf);
if (dststatus != null && args.flags.contains(Options.DELETE)) {
deleteNonexisting(dstfs, dststatus, sorted, jobfs, jobDirectory, jobConf, conf);
}
Path tmpDir =
new Path(
(dstExists && !dstIsDir) || (!dstExists && srcCount == 1)
? args.dst.getParent()
: args.dst,
"_distcp_tmp_" + randomId);
jobConf.set(TMP_DIR_LABEL, tmpDir.toUri().toString());
LOG.info("srcCount=" + srcCount);
jobConf.setInt(SRC_COUNT_LABEL, srcCount);
jobConf.setLong(TOTAL_SIZE_LABEL, byteCount);
setMapCount(byteCount, jobConf);
}
static void checkRecords(
Configuration defaults, int noMaps, int noReduces, Path sortInput, Path sortOutput)
throws IOException {
JobConf jobConf = new JobConf(defaults, RecordChecker.class);
jobConf.setJobName("sortvalidate-record-checker");
jobConf.setInputFormat(SequenceFileInputFormat.class);
jobConf.setOutputFormat(SequenceFileOutputFormat.class);
jobConf.setOutputKeyClass(BytesWritable.class);
jobConf.setOutputValueClass(IntWritable.class);
jobConf.setMapperClass(Map.class);
jobConf.setReducerClass(Reduce.class);
JobClient client = new JobClient(jobConf);
ClusterStatus cluster = client.getClusterStatus();
if (noMaps == -1) {
noMaps = cluster.getTaskTrackers() * jobConf.getInt("test.sortvalidate.maps_per_host", 10);
}
if (noReduces == -1) {
noReduces = (int) (cluster.getMaxReduceTasks() * 0.9);
String sortReduces = jobConf.get("test.sortvalidate.reduces_per_host");
if (sortReduces != null) {
noReduces = cluster.getTaskTrackers() * Integer.parseInt(sortReduces);
}
}
jobConf.setNumMapTasks(noMaps);
jobConf.setNumReduceTasks(noReduces);
FileInputFormat.setInputPaths(jobConf, sortInput);
FileInputFormat.addInputPath(jobConf, sortOutput);
Path outputPath = new Path("/tmp/sortvalidate/recordchecker");
FileSystem fs = FileSystem.get(defaults);
if (fs.exists(outputPath)) {
fs.delete(outputPath, true);
}
FileOutputFormat.setOutputPath(jobConf, outputPath);
// Uncomment to run locally in a single process
// job_conf.set("mapred.job.tracker", "local");
Path[] inputPaths = FileInputFormat.getInputPaths(jobConf);
System.out.println(
"\nSortValidator.RecordChecker: Running on "
+ cluster.getTaskTrackers()
+ " nodes to validate sort from "
+ inputPaths[0]
+ ", "
+ inputPaths[1]
+ " into "
+ FileOutputFormat.getOutputPath(jobConf)
+ " with "
+ noReduces
+ " reduces.");
Date startTime = new Date();
System.out.println("Job started: " + startTime);
JobClient.runJob(jobConf);
Date end_time = new Date();
System.out.println("Job ended: " + end_time);
System.out.println(
"The job took " + (end_time.getTime() - startTime.getTime()) / 1000 + " seconds.");
}
static void checkRecords(Configuration defaults, Path sortInput, Path sortOutput)
throws IOException {
FileSystem inputfs = sortInput.getFileSystem(defaults);
FileSystem outputfs = sortOutput.getFileSystem(defaults);
FileSystem defaultfs = FileSystem.get(defaults);
JobConf jobConf = new JobConf(defaults, RecordStatsChecker.class);
jobConf.setJobName("sortvalidate-recordstats-checker");
int noSortReduceTasks = outputfs.listStatus(sortOutput, sortPathsFilter).length;
jobConf.setInt("sortvalidate.sort.reduce.tasks", noSortReduceTasks);
int noSortInputpaths = inputfs.listStatus(sortInput).length;
jobConf.setInputFormat(NonSplitableSequenceFileInputFormat.class);
jobConf.setOutputFormat(SequenceFileOutputFormat.class);
jobConf.setOutputKeyClass(IntWritable.class);
jobConf.setOutputValueClass(RecordStatsChecker.RecordStatsWritable.class);
jobConf.setMapperClass(Map.class);
jobConf.setCombinerClass(Reduce.class);
jobConf.setReducerClass(Reduce.class);
jobConf.setNumMapTasks(noSortReduceTasks);
jobConf.setNumReduceTasks(1);
FileInputFormat.setInputPaths(jobConf, sortInput);
FileInputFormat.addInputPath(jobConf, sortOutput);
Path outputPath = new Path("/tmp/sortvalidate/recordstatschecker");
if (defaultfs.exists(outputPath)) {
defaultfs.delete(outputPath, true);
}
FileOutputFormat.setOutputPath(jobConf, outputPath);
// Uncomment to run locally in a single process
// job_conf.set("mapred.job.tracker", "local");
Path[] inputPaths = FileInputFormat.getInputPaths(jobConf);
System.out.println(
"\nSortValidator.RecordStatsChecker: Validate sort "
+ "from "
+ inputPaths[0]
+ " ("
+ noSortInputpaths
+ " files), "
+ inputPaths[1]
+ " ("
+ noSortReduceTasks
+ " files) into "
+ FileOutputFormat.getOutputPath(jobConf)
+ " with 1 reducer.");
Date startTime = new Date();
System.out.println("Job started: " + startTime);
JobClient.runJob(jobConf);
Date end_time = new Date();
System.out.println("Job ended: " + end_time);
System.out.println(
"The job took " + (end_time.getTime() - startTime.getTime()) / 1000 + " seconds.");
// Check to ensure that the statistics of the
// framework's sort-input and sort-output match
SequenceFile.Reader stats =
new SequenceFile.Reader(defaultfs, new Path(outputPath, "part-00000"), defaults);
IntWritable k1 = new IntWritable();
IntWritable k2 = new IntWritable();
RecordStatsWritable v1 = new RecordStatsWritable();
RecordStatsWritable v2 = new RecordStatsWritable();
if (!stats.next(k1, v1)) {
throw new IOException("Failed to read record #1 from reduce's output");
}
if (!stats.next(k2, v2)) {
throw new IOException("Failed to read record #2 from reduce's output");
}
if ((v1.getBytes() != v2.getBytes())
|| (v1.getRecords() != v2.getRecords())
|| v1.getChecksum() != v2.getChecksum()) {
throw new IOException(
"("
+ v1.getBytes()
+ ", "
+ v1.getRecords()
+ ", "
+ v1.getChecksum()
+ ") v/s ("
+ v2.getBytes()
+ ", "
+ v2.getRecords()
+ ", "
+ v2.getChecksum()
+ ")");
}
}