@Override
public void valueChanged(ListSelectionEvent e) {
if (!e.getValueIsAdjusting()) {
int rowNum = table.getSelectedRow();
if (rowNum >= 0) {
// get table model
PeptideSpeciesPSMTableModel pepTableModel =
(PeptideSpeciesPSMTableModel) table.getModel();
// get spectrum reference column
int identColNum =
pepTableModel.getColumnIndex(PeptideTableHeader.IDENTIFICATION_ID.getHeader());
int peptideColNum =
pepTableModel.getColumnIndex(PeptideTableHeader.PEPTIDE_ID.getHeader());
// get spectrum id
int modelRowIndex = table.convertRowIndexToModel(rowNum);
Comparable identId = (Comparable) pepTableModel.getValueAt(modelRowIndex, identColNum);
Comparable peptideId =
(Comparable) pepTableModel.getValueAt(modelRowIndex, peptideColNum);
logger.debug(
"Peptide table selection: Protein id: " + identId + " Peptide Id: " + peptideId);
// fire a background task to retrieve peptide
if (peptideId != null && identId != null) {
// publish the event to local event bus
EventService eventBus =
ContainerEventServiceFinder.getEventService(PeptidePSMPane.this);
eventBus.publish(new PSMEvent(PeptidePSMPane.this, controller, identId, peptideId));
}
}
}
}
@SuppressWarnings("unchecked")
private Object initDynamicDefinitionComponent() {
final String selectedPrimitiveFormName =
_dotDefinitionDialogFrame.getSelectedPrimitiveForm();
final DOTProperty currentProperty = _dotDefinitionDialogFrame.getSelectedProperty();
PrimitiveFormPropertyPair pfpPair =
new PrimitiveFormPropertyPair(selectedPrimitiveFormName, currentProperty);
final JTable workWithThisTable = _dynamicTables.get(pfpPair);
int selectedRow = workWithThisTable.getSelectedRow();
if (selectedRow == -1) {
if (workWithThisTable.getModel().getRowCount() > 0) {
selectedRow = 0;
} else {
return null;
}
}
selectedRow = workWithThisTable.convertRowIndexToModel(selectedRow);
final TableModel model = workWithThisTable.getModel();
DynamicDOTItemManager dynamicDOTItemManager = (DynamicDOTItemManager) model;
final DisplayObjectTypeItemWithInterval dotItemWithInterval =
dynamicDOTItemManager.get(selectedRow);
_dynamicDefinitionComponent.fillComponents(dotItemWithInterval);
return dotItemWithInterval.getItem().getPropertyValue();
}
public void secureDelete() {
int rw = tblItems.getSelectedRow();
if (rw == -1) {
JOptionPane.showMessageDialog(frm, "No item selected", "Error", JOptionPane.ERROR_MESSAGE);
return;
}
int idx = tblItems.convertRowIndexToModel(rw);
if (JOptionPane.showConfirmDialog(
frm,
"Delete " + store.plainName(idx) + "?",
"Confirm Delete",
JOptionPane.YES_NO_OPTION)
!= JOptionPane.YES_OPTION) return;
File del = store.delete(idx);
store.fireTableDataChanged();
if (del != null) {
if (del.delete()) {
// successful
needsSave = true;
} else {
System.err.println("Delete " + del.getAbsolutePath() + " failed");
}
}
updateStatus();
}
@Override
public void actionPerformed(ActionEvent e) {
// Object o = table.getModel().getValueAt(table.getSelectedRow(), 0);
int row = table.convertRowIndexToModel(table.getEditingRow());
Object o = table.getModel().getValueAt(row, 0);
JOptionPane.showMessageDialog(table, "Editing: " + o);
}
public void secureAnalysis() {
int rw = tblItems.getSelectedRow();
if (rw != -1) {
int idx = tblItems.convertRowIndexToModel(rw);
String desc = store.describe(idx);
if (JOptionPane.showConfirmDialog(frm, desc, "Details", JOptionPane.OK_CANCEL_OPTION)
== JOptionPane.CANCEL_OPTION) return;
}
if (JOptionPane.showConfirmDialog(frm, store.tagDesc(), "Tags", JOptionPane.OK_CANCEL_OPTION)
== JOptionPane.CANCEL_OPTION) return;
if (JOptionPane.showConfirmDialog(
frm, store.storeDesc(), "Storage", JOptionPane.OK_CANCEL_OPTION)
== JOptionPane.CANCEL_OPTION) return;
}
/**
* @return the list of VISIBLE selected records. Filtered records are not returned even if
* record.selected == true
* @throws IOException
*/
public List<EncodeFileRecord> getSelectedRecords() throws IOException {
List<EncodeFileRecord> selectedRecords = new ArrayList<EncodeFileRecord>();
List<EncodeFileRecord> allRecords = model.getRecords();
int rowCount = table.getRowCount();
for (int i = 0; i < rowCount; i++) {
int modelIdx = table.convertRowIndexToModel(i);
EncodeFileRecord record = allRecords.get(modelIdx);
if (record.isSelected()) {
selectedRecords.add(record);
}
}
return selectedRecords;
}
@Override
public void mouseClicked(MouseEvent e) {
int col = table.columnAtPoint(new Point(e.getX(), e.getY()));
String header = table.getColumnName(col);
if (columnHeader.contains(header)) {
int row = table.rowAtPoint(new Point(e.getX(), e.getY()));
TableModel tableModel = table.getModel();
Object val =
tableModel.getValueAt(
table.convertRowIndexToModel(row), table.convertColumnIndexToModel(col));
if (val != null) {
String text = val.toString();
textDialog.setText(text);
textDialog.setVisible(true);
}
}
}
public void secureMove() {
int rw = tblItems.getSelectedRow();
if (rw == -1) {
JOptionPane.showMessageDialog(frm, "No item selected", "Error", JOptionPane.ERROR_MESSAGE);
return;
}
int idx = tblItems.convertRowIndexToModel(rw);
String[] opts = new String[storeLocs.size()];
for (int i = 0; i < opts.length; i++) opts[i] = storeLocs.get(i).getAbsolutePath();
JComboBox cmbMove = new JComboBox(opts);
cmbMove.setSelectedIndex(store.curStore(idx));
if (JOptionPane.showConfirmDialog(frm, cmbMove, "Move item", JOptionPane.OK_CANCEL_OPTION)
!= JOptionPane.OK_OPTION) return;
File newLoc = store.move(idx, cmbMove.getSelectedIndex());
if (newLoc == null) System.err.println("move " + store.plainName(idx) + " unsuccessful");
else needsSave = true;
}
public void setSwingFocus(ICFLibAnyObj value) {
final String S_ProcName = "setSwingFocus";
if ((value == null) || (value instanceof ICFSecurityISOCountryObj)) {
super.setSwingFocus(value);
} else {
throw CFLib.getDefaultExceptionFactory()
.newUnsupportedClassException(
getClass(), S_ProcName, "value", value, "ICFSecurityISOCountryObj");
}
if (dataTable == null) {
return;
}
if (value == null) {
dataTable.clearSelection();
} else {
ICFInternetISOCountryObj curSelected;
PickerTableModel tblDataModel = getDataModel();
int selectedRow = dataTable.getSelectedRow();
int modelIndex = dataTable.convertRowIndexToModel(selectedRow);
if (selectedRow >= 0) {
Object selectedRowData = tblDataModel.getValueAt(modelIndex, COLID_ROW_HEADER);
curSelected = (ICFInternetISOCountryObj) selectedRowData;
} else {
curSelected = null;
}
if (curSelected != value) {
int len = tblDataModel.getRowCount();
int idx = 0;
while ((idx < len) && (tblDataModel.getValueAt(idx, COLID_ROW_HEADER) != value)) {
idx++;
}
if (idx < len) {
int viewRow = dataTable.convertRowIndexToView(idx);
dataTable.clearSelection();
dataTable.addRowSelectionInterval(viewRow, viewRow);
}
}
}
}