// TODO zgire - why iterate through tracksToRemove if you end up calling clearFeatures() at the
// end?
public void clearTracksForReloadState() {
ArrayList<HiCTrack> tracksToRemove = new ArrayList<HiCTrack>(trackManager.getLoadedTracks());
for (HiCTrack trackToRemove : tracksToRemove) {
if (trackToRemove.getName().equals(eigString)) {
eigenvectorTrack = null;
} else if (trackToRemove.getName().equals(ctrlEigString)) {
controlEigenvectorTrack = null;
} else {
trackManager.removeTrack(trackToRemove);
}
}
clearFeatures();
superAdapter.updateTrackPanel();
}
public List<HiCTrack> getLoadedTrackList() {
return trackManager.getLoadedTracks();
}
public java.util.List<HiCTrack> getLoadedTracks() {
return trackManager == null ? new ArrayList<HiCTrack>() : trackManager.getLoadedTracks();
}