@Override
public void actionPerformed(ActionEvent e) {
if (e.getSource() == spvp.getDeleteAllButton()) {
Icy.getMainInterface().getSwimmingPool().removeAll();
}
}
@Override
protected void finalize() throws Throwable {
// unregister plugin (weak reference so we can do it here)
Icy.getMainInterface().unRegisterPlugin(this);
super.finalize();
}
/** Handle {@link MainFrame#PROPERTY_DETACHEDMODE} property change here. */
@Override
public void propertyChange(PropertyChangeEvent evt) {
final boolean isDetached = Icy.getMainInterface().isDetachedMode();
final ImageJToolRibbonBand band = (ImageJToolRibbonBand) getBand(1);
band.setDetachedBtnPressed(isDetached);
band.updateEnable(isDetached);
}
/** Initialization stuff which cannot be done at construction time */
public void init() {
// refresh band state
propertyChange(null);
final MainFrame mainFrame = Icy.getMainInterface().getMainFrame();
// we listen detach mode change
if (mainFrame != null)
mainFrame.addPropertyChangeListener(MainFrame.PROPERTY_DETACHEDMODE, this);
}
private void refreshGUI() {
spvp.getScrollPanel().removeAll();
for (SwimmingObject result : Icy.getMainInterface().getSwimmingPool().getObjects()) {
JPanel panel = new SwimmingPoolObjectPanel(result);
ComponentUtil.setFixedHeight(panel, 40);
spvp.getScrollPanel().add(panel);
}
spvp.getScrollPanel().add(Box.createVerticalGlue());
String text = "No object in swimming pool.";
int numberOfSwimmingObject = Icy.getMainInterface().getSwimmingPool().getObjects().size();
if (numberOfSwimmingObject > 0) {
text = "" + numberOfSwimmingObject + " objects in swimming pool.";
}
spvp.getNumberOfSwimmingObjectLabel().setText(text);
spvp.getScrollPane().invalidate();
spvp.getScrollPane().repaint();
}
public SwimmingPoolViewer() {
mainFrame.getContentPane().setLayout(new BorderLayout());
mainFrame.getContentPane().add(spvp, BorderLayout.CENTER);
mainFrame.setVisible(true);
mainFrame.setPreferredSize(new Dimension(400, 400));
mainFrame.addToDesktopPane();
mainFrame.center();
mainFrame.pack();
Icy.getMainInterface().getSwimmingPool().addListener(this);
spvp.getDeleteAllButton().addActionListener(this);
refreshGUI();
mainFrame.requestFocus();
}
@Override
public void removeListener(Object source) {
Icy.getMainInterface().removeListener(this);
}
/** The width of the inner component of the inspector should not exceed 300. */
public InspectorPanel() {
super("Inspector", "inspector", new Point(600, 140), new Dimension(280, 600));
// tab panel
mainPane = new ExtTabbedPanel();
mainPane.setTabLayoutPolicy(JTabbedPane.SCROLL_TAB_LAYOUT);
// main panels
sequencePanel = new SequencePanel();
// final JPanel pluginsPanel = new PluginsPanel();
roisPanel = new RoisPanel(true, true);
layersPanel = new LayersPanel(true, true);
historyPanel = new UndoManagerPanel();
outputConsolePanel = new OutputConsolePanel();
chatPanel = new ChatPanel();
// add main tab panels
mainPane.addTab(
"Sequence",
null,
new JScrollPane(
sequencePanel,
ScrollPaneConstants.VERTICAL_SCROLLBAR_AS_NEEDED,
ScrollPaneConstants.HORIZONTAL_SCROLLBAR_NEVER),
"Sequence informations");
// mainPane.add("Active Plugin", pluginsPanel);
mainPane.addTab("Layer", null, layersPanel, "Show all layers details");
mainPane.addTab("ROI", null, roisPanel, "Manage / edit your ROI");
// mainPane.addTab("History", null, historyPanel, "Actions history");
mainPane.addTab("Output", null, outputConsolePanel, "Console output");
mainPane.addTab("Chat", null, chatPanel, "Chat room");
// minimum required size for sequence infos panel
final Dimension minDim = new Dimension(280, 480);
getFrame().setMinimumSizeInternal(minDim);
getFrame().setMinimumSizeExternal(minDim);
setMinimumSize(minDim);
setLayout(new BorderLayout());
add(mainPane, BorderLayout.CENTER);
add(new MemoryMonitorPanel(), BorderLayout.SOUTH);
validate();
setVisible(true);
// get default color of tab background
final Color defaultBgColor = mainPane.getBackgroundAt(0);
mainPane.addChangeListener(
new ChangeListener() {
@Override
public void stateChanged(ChangeEvent e) {
final int index = getIndexOfTab(outputConsolePanel);
// set back default tab color
if ((index != -1) && (mainPane.getSelectedIndex() == index))
mainPane.setBackgroundAt(index, defaultBgColor);
}
});
outputConsolePanel.addOutputConsoleChangeListener(
new OutputConsoleChangeListener() {
@Override
public void outputConsoleChanged(OutputConsolePanel source, boolean isError) {
final int index = getIndexOfTab(outputConsolePanel);
if ((index != -1) && (mainPane.getSelectedIndex() != index)) {
final boolean fIsError = isError;
ThreadUtil.invokeLater(
new Runnable() {
@Override
public void run() {
// change output console tab color when new data
if (fIsError) mainPane.setBackgroundAt(index, Color.red);
else if (!mainPane.getBackgroundAt(index).equals(Color.red))
mainPane.setBackgroundAt(index, Color.blue);
}
});
}
}
});
// add focused sequence & viewer listener
Icy.getMainInterface().addFocusedViewerListener(this);
Icy.getMainInterface().addFocusedSequenceListener(this);
}
/**
* Save the specified sequence in the specified file.<br>
* When the sequence contains severals image the multipleFile flag is used to indicate if images
* are saved as separate files (file then specify a directory) or not.<br>
* <code>zMin</code> - <code>zMax</code> and <code>tMin</code> - <code>tMax</code> define the Z
* and T images range to save.<br>
*
* @param formatWriter writer used to save sequence (define the image format).<br>
* If set to <code>null</code> then writer is determined from the file extension.<br>
* If destination file does not have a valid extension (for folder for instance) then you have
* to specify a valid Writer to write the image file (see {@link #getWriter(ImageFileFormat)})
* @param sequence sequence to save
* @param file file where we want to save sequence.<br>
* Depending the <code>formatWriter</code> the file extension may be modified.<br>
* That is preferred as saving an image with a wrong extension may result in error on future
* read (wrong reader detection).
* @param zMin start Z position to save
* @param zMax end Z position to save
* @param tMin start T position to save
* @param tMax end T position to save
* @param fps frame rate for AVI sequence save
* @param multipleFile flag to indicate if images are saved in separate file
* @param showProgress show progress bar
* @param addToRecent add the saved sequence to recent opened sequence list
*/
public static void save(
IFormatWriter formatWriter,
Sequence sequence,
File file,
int zMin,
int zMax,
int tMin,
int tMax,
int fps,
boolean multipleFile,
boolean showProgress,
boolean addToRecent) {
final String filePath = FileUtil.cleanPath(FileUtil.getGenericPath(file.getAbsolutePath()));
final int sizeT = (tMax - tMin) + 1;
final int sizeZ = (zMax - zMin) + 1;
final int numImages = sizeT * sizeZ;
final FileFrame saveFrame;
final ApplicationMenu mainMenu;
if (addToRecent) mainMenu = Icy.getMainInterface().getApplicationMenu();
else mainMenu = null;
if (showProgress && !Icy.getMainInterface().isHeadLess())
saveFrame = new FileFrame("Saving", filePath);
else saveFrame = null;
try {
if (saveFrame != null) {
saveFrame.setLength(numImages);
saveFrame.setPosition(0);
}
// need multiple files ?
if ((numImages > 1) && multipleFile) {
final IFormatWriter writer;
// so we won't create it for each image
if (formatWriter == null) writer = getWriter(file, ImageFileFormat.TIFF);
else writer = formatWriter;
if (writer == null)
throw new UnknownFormatException(
"Can't find a valid image writer for the specified file: " + file);
// save as severals images
final DecimalFormat decimalFormat = new DecimalFormat("0000");
final String fileName = FileUtil.getFileName(filePath, false);
String fileExt = FileUtil.getFileExtension(filePath, true);
String fileBaseDirectory = FileUtil.getDirectory(filePath);
if (fileBaseDirectory.endsWith("/"))
fileBaseDirectory = fileBaseDirectory.substring(0, fileBaseDirectory.length() - 1);
// no extension (directory) ?
if (StringUtil.isEmpty(fileExt)) {
// filename is part of directory
fileBaseDirectory += FileUtil.separator + fileName;
// use the default file extension for the specified writer
fileExt = "." + getImageFileFormat(writer, ImageFileFormat.TIFF).getExtensions()[0];
}
final String filePathWithoutExt = fileBaseDirectory + FileUtil.separator + fileName;
// create output directory
FileUtil.createDir(fileBaseDirectory);
// default name used --> use filename
if (sequence.isDefaultName()) sequence.setName(fileName);
sequence.setFilename(fileBaseDirectory);
for (int t = tMin; t <= tMax; t++) {
for (int z = zMin; z <= zMax; z++) {
String filename = filePathWithoutExt;
if ((tMax - tMin) > 0) filename += "_t" + decimalFormat.format(t);
if ((zMax - zMin) > 0) filename += "_z" + decimalFormat.format(z);
filename += fileExt;
// save as single image file
save(writer, sequence, filename, z, z, t, t, fps, saveFrame);
}
}
// add as one item to recent file list
if (mainMenu != null) mainMenu.addRecentFile(fileBaseDirectory);
} else {
final String fileExt = FileUtil.getFileExtension(filePath, false);
final ImageFileFormat iff;
if (formatWriter != null) iff = getImageFileFormat(formatWriter, ImageFileFormat.TIFF);
else iff = ImageFileFormat.getWriteFormat(fileExt, ImageFileFormat.TIFF);
// force to set correct file extension
final String fixedFilePath;
if (iff.matches(fileExt)) fixedFilePath = filePath;
else fixedFilePath = filePath + "." + iff.getExtensions()[0];
// default name used --> use filename
if (sequence.isDefaultName()) sequence.setName(FileUtil.getFileName(fixedFilePath, false));
sequence.setFilename(fixedFilePath);
// save into a single file
save(formatWriter, sequence, fixedFilePath, zMin, zMax, tMin, tMax, fps, saveFrame);
// add as one item to recent file list
if (mainMenu != null) mainMenu.addRecentFile(fixedFilePath);
}
// Sequence persistence enabled --> save XML
if (GeneralPreferences.getSequencePersistence()) sequence.saveXMLData();
} catch (Exception e) {
IcyExceptionHandler.showErrorMessage(e, true);
if (showProgress && !Icy.getMainInterface().isHeadLess())
new FailedAnnounceFrame("Failed to save image(s) (see output console for details)", 15);
return;
} finally {
if (saveFrame != null) saveFrame.close();
}
}
public IcyBufferedImage getFocusedImage() {
return Icy.getMainInterface().getFocusedImage();
}
public Sequence getFocusedSequence() {
return Icy.getMainInterface().getFocusedSequence();
}
public Viewer getFocusedViewer() {
return Icy.getMainInterface().getFocusedViewer();
}
public ArrayList<Sequence> getSequences() {
return Icy.getMainInterface().getSequences();
}
public void addSequence(final Sequence sequence) {
Icy.getMainInterface().addSequence(sequence);
}