Пример #1
0
 private int countRecords(final SamReader reader) {
   int count = 0;
   try (final SAMRecordIterator iter = reader.iterator()) {
     while (iter.hasNext()) {
       iter.next();
       count++;
     }
   }
   return count;
 }
Пример #2
0
 private int countRecordsInQueryInterval(final SamReader reader, final QueryInterval query) {
   final SAMRecordIterator iter = reader.queryOverlapping(new QueryInterval[] {query});
   int count = 0;
   while (iter.hasNext()) {
     iter.next();
     count++;
   }
   iter.close();
   return count;
 }