Пример #1
0
  @Override
  public void update() {

    if (burninMessage != null && logger.getBurninExceeded()) {
      seriesFig.removeElement(burninMessage);

      burninMessage = null;
    }
    if (logger.getBurninExceeded()) {
      seriesFig.inferBoundsFromCurrentSeries();
      meanSeries.setYVals(rhLogger.getMeans());

      if (upper95Series == null && rhLogger.getHistoTriggerReached()) {
        upper95Series =
            new ConstSizeSeries("Upper 95%", rhLogger.getUpper95s(), rhLogger.getBinPositions());
        XYSeriesElement upperEl =
            new XYSeriesElement(upper95Series, seriesFig.getAxes(), seriesFig);
        upperEl.setLineColor(Color.blue);
        upperEl.setLineWidth(0.75f);
        upperEl.setCanConfigure(true);
        seriesFig.addSeriesElement(upperEl);
      }

      if (lower95Series == null && rhLogger.getHistoTriggerReached()) {
        lower95Series =
            new ConstSizeSeries("Lower 95%", rhLogger.getLower95s(), rhLogger.getBinPositions());
        XYSeriesElement lowerEl =
            new XYSeriesElement(lower95Series, seriesFig.getAxes(), seriesFig);
        lowerEl.setLineColor(Color.blue);
        lowerEl.setLineWidth(0.75f);
        lowerEl.setCanConfigure(true);
        seriesFig.addSeriesElement(lowerEl);
      }
      if (upper95Series != null) upper95Series.setYVals(rhLogger.getUpper95s());
      if (lower95Series != null) {
        lower95Series.setYVals(rhLogger.getLower95s());
      }
    }
    seriesFig.repaint();
  }
Пример #2
0
  @Override
  public void initialize() {
    this.rhLogger = (RootHeightDensity) logger;

    meanSeries =
        new ConstSizeSeries("Mean height", rhLogger.getMeans(), rhLogger.getBinPositions());
    XYSeriesElement meanEl = new XYSeriesElement(meanSeries, seriesFig.getAxes(), seriesFig);
    meanEl.setLineColor(Color.blue);
    meanEl.setLineWidth((float) 1.5);
    meanEl.setCanConfigure(true);
    seriesFig.addSeriesElement(meanEl);
    seriesFig.setXLabel("Sequence Position");
    seriesFig.setYLabel("Time to most recent common ancestor");

    burninMessage =
        new TextElement("Burnin period (" + logger.getBurnin() + ") not exceeded", seriesFig);
    burninMessage.setPosition(0.45, 0.5);
    seriesFig.addElement(burninMessage);
  }