private void updateFields() {
deLongNameValueLabel.setText(tempDE.getLongName());
deIdValueLabel.setText(ConventionUtil.publicIdVersion(tempDE));
if (tempDE.getContext() != null) deContextNameValueLabel.setText(tempDE.getContext().getName());
else deContextNameValueLabel.setText("");
if (tempDE.getValueDomain() != null)
vdLongNameValueLabel.setText(tempDE.getValueDomain().getLongName());
else vdLongNameValueLabel.setText("");
if (prefs.getShowConceptCodeNameSummary()) {
List<gov.nih.nci.ncicb.cadsr.domain.Concept> concepts =
cadsrModule.getConcepts(tempDE.getDataElementConcept().getProperty());
if (concepts != null && concepts.size() > 0) {
StringBuffer conceptCodeSummary = new StringBuffer();
StringBuffer conceptNameSummary = new StringBuffer();
for (Concept con : concepts) {
conceptCodeSummary.append(con.getPreferredName());
conceptCodeSummary.append(" ");
conceptNameSummary.append(con.getLongName());
conceptNameSummary.append(" ");
}
conceptCodeSummaryValue.setText(conceptCodeSummary.toString());
conceptNameSummaryValue.setText(conceptNameSummary.toString());
}
}
enableCDELinks();
}
private DataElementConcept existingMapping(DataElementConcept dec) {
List<String> eager = new ArrayList<String>();
eager.add(EagerConstants.AC_CS_CSI);
List<DataElementConcept> l = dataElementConceptDAO.find(dec, eager);
if (l.size() == 0)
throw new PersisterException(
PropertyAccessor.getProperty("dec.existing.error", ConventionUtil.publicIdVersion(dec)));
DataElementConcept existingDec = l.get(0);
return existingDec;
}
public void persist() {
DataElementConcept dec = DomainObjectFactory.newDataElementConcept();
List<DataElementConcept> decs = elements.getElements(dec);
logger.debug("***** Inside DEC Persist ");
int count = 0;
sendProgressEvent(count++, decs.size(), "DECs");
logger.debug("decs... ");
if (decs != null) {
for (ListIterator<DataElementConcept> it = decs.listIterator(); it.hasNext(); ) {
DataElementConcept newDec = DomainObjectFactory.newDataElementConcept();
dec = it.next();
sendProgressEvent(count++, decs.size(), "DEC : " + dec.getLongName());
List<AlternateName> passedAltNames = new ArrayList<AlternateName>();
for (AlternateName _an : dec.getAlternateNames()) passedAltNames.add(_an);
List<Definition> modelDefinitions = new ArrayList<Definition>();
for (Definition _def : dec.getDefinitions()) modelDefinitions.add(_def);
List<AdminComponentClassSchemeClassSchemeItem> passedACCSCSI = dec.getAcCsCsis();
dec.removeDefinitions();
dec.removeAlternateNames();
if (!StringUtil.isEmpty(dec.getPublicId()) && dec.getVersion() != null) {
newDec = existingMapping(dec);
dec.setId(newDec.getId());
for (AlternateName _an : passedAltNames) {
persisterUtil.addAlternateName(dec, _an);
}
it.set(newDec);
persisterUtil.addPackageClassification(dec);
logger.info(PropertyAccessor.getProperty("mapped.to.existing.dec"));
continue;
}
// update object class with persisted one
if (dec.getObjectClass().getPublicId() == null)
dec.setObjectClass(LookupUtil.lookupObjectClass(dec.getObjectClass().getPreferredName()));
else
dec.setObjectClass(
LookupUtil.lookupObjectClass(
dec.getObjectClass().getPublicId(), dec.getObjectClass().getVersion()));
newDec.setObjectClass(dec.getObjectClass());
// update property with persisted one
if (dec.getProperty().getPublicId() == null)
dec.setProperty(LookupUtil.lookupProperty(dec.getProperty().getPreferredName()));
else
dec.setProperty(
LookupUtil.lookupProperty(
dec.getProperty().getPublicId(), dec.getProperty().getVersion()));
newDec.setProperty(dec.getProperty());
logger.debug("dec name: " + dec.getLongName());
// logger.debug("alt Name: " + ne);
List<String> eager = new ArrayList<String>();
eager.add("definitions");
// does this dec exist?
List l = dataElementConceptDAO.find(newDec, eager);
logger.debug("***** decs size : " + l.size());
if (l.size() == 0) {
logger.debug("***** one or more decs ");
if (dec.getConceptualDomain() == null)
dec.setConceptualDomain(defaults.getConceptualDomain());
dec.setContext(defaults.getContext());
dec.setLongName(
dec.getObjectClass().getLongName() + " " + dec.getProperty().getLongName());
dec.setPreferredDefinition(
dec.getObjectClass().getPreferredDefinition()
+ DEC_PREFERRED_DEF_CONCAT_CHAR
+ dec.getProperty().getPreferredDefinition());
dec.setPreferredName(
ConventionUtil.publicIdVersion(dec.getObjectClass())
+ DEC_PREFERRED_NAME_CONCAT_CHAR
+ ConventionUtil.publicIdVersion(dec.getProperty()));
dec.setVersion(new Float(1.0f));
dec.setWorkflowStatus(defaults.getWorkflowStatus());
dec.setProperty(LookupUtil.lookupProperty(dec.getProperty().getPreferredName()));
dec.setAudit(defaults.getAudit());
dec.setLifecycle(defaults.getLifecycle());
StringBuilder builder = new StringBuilder();
for (char currentChar : dec.getPreferredDefinition().toCharArray()) {
Character replacementChar = charReplacementMap.get(currentChar);
builder.append(replacementChar != null ? replacementChar : currentChar);
}
dec.setPreferredDefinition(builder.toString());
logger.debug(
"***** preferred name " + dec.getPreferredName() + " public ID " + dec.getPublicId());
newDec = dataElementConceptDAO.create(dec);
logger.info(PropertyAccessor.getProperty("created.dec"));
} else {
newDec = (DataElementConcept) l.get(0);
logger.info(PropertyAccessor.getProperty("existed.dec"));
/* if DEC alreay exists, check context
* If context is different, add Used_by alt_name
*/
dec.setId(newDec.getId());
if (!newDec.getContext().getId().equals(defaults.getContext().getId())) {
AlternateName _an = DomainObjectFactory.newAlternateName();
_an.setName(defaults.getContext().getName());
_an.setType(AlternateName.TYPE_USED_BY);
persisterUtil.addAlternateName(dec, _an);
}
}
dec.setId(newDec.getId());
for (AlternateName _an : passedAltNames) {
persisterUtil.addAlternateName(dec, _an);
}
for (Definition def : modelDefinitions) {
persisterUtil.addAlternateDefinition(dec, def);
}
LogUtil.logAc(newDec, logger);
logger.info("-- Public ID: " + newDec.getPublicId());
logger.info(
PropertyAccessor.getProperty("oc.longName", newDec.getObjectClass().getLongName()));
logger.info(
PropertyAccessor.getProperty("prop.longName", newDec.getProperty().getLongName()));
dec.setAcCsCsis(passedACCSCSI);
persisterUtil.addPackageClassification(dec);
it.set(newDec);
// dec still referenced in DE. Need ID to retrieve it in DEPersister.
dec.setId(newDec.getId());
}
}
logger.debug("***** End DEC persist");
}