/**
   * Initializes the GUI by creating the components, placing them in the dialog, and displaying
   * them.
   */
  private void init() {
    setForeground(Color.black);

    setTitle("Nonlocal Means Filter");

    JPanel mainPanel;
    mainPanel = new JPanel();
    mainPanel.setBorder(BorderFactory.createEmptyBorder(3, 3, 3, 3));
    mainPanel.setLayout(new GridBagLayout());

    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridwidth = 1;
    gbc.gridheight = 1;
    gbc.anchor = GridBagConstraints.WEST;
    gbc.weightx = 1;
    gbc.insets = new Insets(3, 3, 3, 3);
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.fill = GridBagConstraints.HORIZONTAL;

    paramPanel = new JPanel(new GridBagLayout());
    paramPanel.setForeground(Color.black);
    paramPanel.setBorder(buildTitledBorder("Parameters"));
    mainPanel.add(paramPanel, gbc);

    GridBagConstraints gbc2 = new GridBagConstraints();
    gbc2.gridwidth = 1;
    gbc2.gridheight = 1;
    gbc2.anchor = GridBagConstraints.WEST;
    gbc2.weightx = 1;
    gbc2.insets = new Insets(3, 3, 3, 3);
    gbc2.gridx = 0;
    gbc2.gridy = 0;
    gbc2.fill = GridBagConstraints.HORIZONTAL;

    labelSearchWindowSide = createLabel("Search window side (odd)");

    paramPanel.add(labelSearchWindowSide, gbc2);

    gbc2.gridx = 1;
    textSearchWindowSide = createTextField("15");
    paramPanel.add(textSearchWindowSide, gbc2);

    gbc2.gridx = 0;
    gbc2.gridy = 1;
    labelSimilarityWindowSide = createLabel("Similarity window side (odd) ");
    paramPanel.add(labelSimilarityWindowSide, gbc2);

    gbc2.gridx = 1;
    textSimilarityWindowSide = createTextField("7");
    paramPanel.add(textSimilarityWindowSide, gbc2);

    gbc2.gridx = 0;
    gbc2.gridy = 2;
    labelNoiseStandardDeviation = createLabel("Noise standard deviation ");
    paramPanel.add(labelNoiseStandardDeviation, gbc2);

    gbc2.gridx = 1;
    textNoiseStandardDeviation = createTextField("10.0");
    paramPanel.add(textNoiseStandardDeviation, gbc2);

    gbc2.gridx = 0;
    gbc2.gridy = 3;
    labelDegree = createLabel("Degree of filtering ");
    labelDegree.setEnabled(doRician);
    paramPanel.add(labelDegree, gbc2);

    gbc2.gridx = 1;
    textDegree = createTextField("1.414");
    textDegree.setEnabled(doRician);
    paramPanel.add(textDegree, gbc2);

    gbc2.gridx = 0;
    gbc2.gridy = 4;
    doRicianCheckBox = new JCheckBox("Deal with Rician noise in MRI");
    doRicianCheckBox.setFont(serif12);
    doRicianCheckBox.setSelected(false);
    doRicianCheckBox.addActionListener(this);
    paramPanel.add(doRicianCheckBox, gbc2);

    if (image.getNDims() > 2) {
      gbc2.gridx = 0;
      gbc2.gridy = 5;
      gbc2.gridwidth = 2;

      image25DCheckBox = new JCheckBox("Process each slice independently (2.5D)");
      image25DCheckBox.setFont(serif12);
      paramPanel.add(image25DCheckBox, gbc2);
      image25DCheckBox.setSelected(false);
    } // if (image.getNDims > 2)

    JPanel outputOptPanel = new JPanel(new GridLayout(1, 2));
    destinationPanel = new JPanel(new BorderLayout());
    destinationPanel.setForeground(Color.black);
    destinationPanel.setBorder(buildTitledBorder("Destination"));
    outputOptPanel.add(destinationPanel);

    destinationGroup = new ButtonGroup();
    newImage = new JRadioButton("New image", true);
    newImage.setBounds(10, 16, 120, 25);
    newImage.setFont(serif12);
    destinationGroup.add(newImage);
    destinationPanel.add(newImage, BorderLayout.NORTH);

    replaceImage = new JRadioButton("Replace image", false);
    replaceImage.setFont(serif12);
    destinationGroup.add(replaceImage);
    destinationPanel.add(replaceImage, BorderLayout.CENTER);

    // Only if the image is unlocked can it be replaced.
    if (image.getLockStatus() == ModelStorageBase.UNLOCKED) {
      replaceImage.setEnabled(true);
    } else {
      replaceImage.setEnabled(false);
    }

    gbc.gridx = 0;
    gbc.gridy = 1;
    mainPanel.add(outputOptPanel, gbc);

    mainDialogPanel.add(mainPanel, BorderLayout.CENTER);
    mainDialogPanel.add(buildButtons(), BorderLayout.SOUTH);

    getContentPane().add(mainDialogPanel);

    pack();
    setResizable(true);
    // setVisible(true);

    System.gc();
  }
Пример #2
0
  /** Sets up the GUI (panels, buttons, etc) and displays it on the screen. */
  private void init() {
    if (image.getFileInfo(0).getFileFormat() == FileUtility.DICOM) {
      FileInfoDicom dicomInfo = (FileInfoDicom) image.getFileInfo(0);
      FileDicomTagTable tagTable = dicomInfo.getTagTable();
      if (tagTable.getValue("0018,1310") != null) {
        // Acquisition matrix
        FileDicomTag tag = tagTable.get(new FileDicomKey("0018,1310"));
        Object[] values = tag.getValueList();
        int valNumber = values.length;
        if ((valNumber == 4) && (values instanceof Short[])) {
          int frequencyRows = ((Short) values[0]).intValue();
          Preferences.debug("frequencyRows = " + frequencyRows + "\n");
          int frequencyColumns = ((Short) values[1]).intValue();
          Preferences.debug("frequencyColumns = " + frequencyColumns + "\n");
          int phaseRows = ((Short) values[2]).intValue();
          Preferences.debug("phaseRows = " + phaseRows + "\n");
          int phaseColumns = ((Short) values[3]).intValue();
          Preferences.debug("phaseColumns = " + phaseColumns + "\n");
          if ((frequencyRows > 0) && (phaseRows == 0)) {
            subYDim = frequencyRows;
          } else if ((frequencyRows == 0) && (phaseRows > 0)) {
            subYDim = phaseRows;
          }
          if ((frequencyColumns > 0) && (phaseColumns == 0)) {
            subXDim = frequencyColumns;
          } else if ((frequencyColumns == 0) && (phaseColumns > 0)) {
            subXDim = phaseColumns;
          }
        }
      } // if (tagTable.getValue("0018,1310") != null)
      if (tagTable.getValue("0019,100A") != null) {
        FileDicomTag tag = tagTable.get(new FileDicomKey("0019,100A"));
        Object value = tag.getValue(false);
        if (value instanceof Short) {
          numberOfImagesInMosaic = ((Short) value).intValue();
          Preferences.debug("Number of images in mosaic = " + numberOfImagesInMosaic + "\n");
        }
      } // if (tagTable.getValue("0019,100A") != null)
    } // if (image.getFileInfo(0).getFileFormat() == FileUtility.DICOM)*/
    setForeground(Color.black);
    setTitle("Mosaic To 3D Volume");

    JPanel inputPanel = new JPanel(new GridBagLayout());
    inputPanel.setForeground(Color.black);

    inputPanel.setBorder(buildTitledBorder("Image"));

    JLabel labelUse = new JLabel("Image:");
    labelUse.setForeground(Color.black);
    labelUse.setFont(serif12);

    JLabel labelImage = new JLabel(image.getImageName());
    labelImage.setForeground(Color.black);
    labelImage.setFont(serif12);

    GridBagConstraints gbc = new GridBagConstraints();
    gbc.gridx = 0;
    gbc.gridy = 0;
    gbc.gridheight = 1;
    gbc.gridwidth = 1;
    gbc.anchor = GridBagConstraints.WEST;
    gbc.weightx = 1;
    gbc.insets = new Insets(5, 5, 5, 5);
    inputPanel.add(labelUse, gbc);
    gbc.gridx = 1;
    gbc.fill = GridBagConstraints.HORIZONTAL;
    inputPanel.add(labelImage, gbc);

    JPanel dimensionPanel = new JPanel(new GridBagLayout());
    dimensionPanel.setForeground(Color.black);
    dimensionPanel.setBorder(buildTitledBorder("X and Y Dimensions of Result"));

    JLabel labelXDim = new JLabel("X dimension of slices");
    labelXDim.setForeground(Color.black);
    labelXDim.setFont(serif12);

    textXDim = new JTextField(10);
    if (subXDim != 0) {
      textXDim.setText(String.valueOf(subXDim));
    }
    textXDim.setFont(serif12);
    textXDim.setForeground(Color.black);

    JLabel labelYDim = new JLabel("Y dimension of slices");
    labelYDim.setForeground(Color.black);
    labelYDim.setFont(serif12);

    textYDim = new JTextField(10);
    if (subYDim != 0) {
      textYDim.setText(String.valueOf(subYDim));
    }
    textYDim.setFont(serif12);
    textYDim.setForeground(Color.black);

    JLabel labelNumberImages = new JLabel("Number of images in mosaic");
    labelNumberImages.setForeground(Color.black);
    labelNumberImages.setFont(serif12);

    textNumberImages = new JTextField(10);
    if (numberOfImagesInMosaic != 0) {
      textNumberImages.setText(String.valueOf(numberOfImagesInMosaic));
    }
    textNumberImages.setFont(serif12);
    textNumberImages.setForeground(Color.black);

    gbc.gridx = 0;
    gbc.gridy = 0;
    dimensionPanel.add(labelXDim, gbc);
    gbc.gridx = 1;
    dimensionPanel.add(textXDim, gbc);
    gbc.gridx = 0;
    gbc.gridy = 1;
    dimensionPanel.add(labelYDim, gbc);
    gbc.gridx = 1;
    dimensionPanel.add(textYDim, gbc);
    gbc.gridx = 0;
    gbc.gridy = 2;
    dimensionPanel.add(labelNumberImages, gbc);
    gbc.gridx = 1;
    dimensionPanel.add(textNumberImages, gbc);

    JPanel mainPanel = new JPanel(new BorderLayout());
    mainPanel.add(inputPanel, BorderLayout.NORTH);
    mainPanel.add(dimensionPanel, BorderLayout.CENTER);
    mainPanel.setBorder(BorderFactory.createEmptyBorder(5, 5, 5, 5));

    JPanel buttonPanel = new JPanel();
    buttonPanel.add(buildButtons());

    getContentPane().add(mainPanel);
    getContentPane().add(buttonPanel, BorderLayout.SOUTH);
    pack();
    setVisible(true);
  }