@Override
public Bag makeBagInPlace(
Version version,
boolean retainBaseDirectory,
boolean keepEmptyDirectories,
Completer completer) {
log.info(MessageFormat.format("Making a bag in place at {0}", this.dir));
File dataDir = new File(this.dir, this.bagFactory.getBagConstants(version).getDataDirectory());
log.trace("Data directory is " + dataDir);
try {
// If there is no data direct
if (!dataDir.exists()) {
log.trace("Data directory does not exist");
// If retainBaseDirectory
File moveToDir = dataDir;
if (retainBaseDirectory) {
log.trace("Retaining base directory");
// Create new base directory in data directory
moveToDir = new File(dataDir, this.dir.getName());
// Move contents of base directory to new base directory
}
log.debug(
MessageFormat.format(
"Data directory does not exist so moving files to {0}", moveToDir));
for (File file : FileHelper.normalizeForm(this.dir.listFiles())) {
if (!(file.equals(dataDir)
|| (file.isDirectory() && this.ignoreDirs.contains(file.getName())))) {
log.trace(MessageFormat.format("Moving {0} to {1}", file, moveToDir));
FileUtils.moveToDirectory(file, moveToDir, true);
} else {
log.trace(MessageFormat.format("Not moving {0}", file));
}
}
} else {
if (!dataDir.isDirectory())
throw new RuntimeException(MessageFormat.format("{0} is not a directory", dataDir));
// Look for additional, non-ignored files
for (File file : FileHelper.normalizeForm(this.dir.listFiles())) {
// If there is a directory that isn't the data dir and isn't ignored and pre v0.97 then
// exception
if (file.isDirectory()
&& (!file.equals(dataDir))
&& !this.ignoreDirs.contains(file.getName())
&& (Version.V0_93 == version
|| Version.V0_94 == version
|| Version.V0_95 == version
|| Version.V0_96 == version)) {
throw new RuntimeException(
"Found additional directories in addition to existing data directory.");
}
}
}
} catch (IOException ex) {
throw new RuntimeException(ex);
}
// Handle empty directories
if (keepEmptyDirectories) {
log.debug("Adding .keep files to empty directories");
this.addKeep(dataDir);
} else {
log.trace("Not adding .keep files to empty directories");
}
// Copy the tags
log.debug("Copying tag files");
for (File tagFile : this.tagFiles) {
log.trace(MessageFormat.format("Copying tag file {0} to {1}", tagFile, this.dir));
try {
FileUtils.copyFileToDirectory(tagFile, this.dir);
} catch (IOException ex) {
throw new RuntimeException(ex);
}
}
// Create a bag
log.debug(MessageFormat.format("Creating bag by payload files at {0}", this.dir));
Bag bag = this.bagFactory.createBagByPayloadFiles(this.dir, version, this.ignoreDirs);
// Complete the bag
log.debug("Making complete");
bag = bag.makeComplete(completer);
// Write the bag
log.debug("Writing");
return bag.write(new FileSystemWriter(this.bagFactory), this.dir);
}
/**
* Creates an AP Trust compliant bag
*
* @param destinationDir the directory into which the bag will be serialized
* @param tar if true, a tar file will be the ultimate output, if false a simple directory
* structure (note: the current implementation writes out a directory structure first and tars
* it second)
* @return a BagSummary referencing the the file that represents the root of the bag (either the
* tar file or the bag directory) and a checksum if the bag is a tar file
* @throws Exception
*/
public BagSummary serializeAPTrustBag(File destinationDir, boolean tar) throws Exception {
long payloadSize = 0;
if (!destinationDir.exists()) {
destinationDir.mkdirs();
} else {
if (!destinationDir.isDirectory()) {
throw new IllegalArgumentException(destinationDir + " is not a directory!");
}
}
File file = new File(destinationDir, getAptrustBagName());
BagFactory f = new BagFactory();
final Bag b = f.createBag();
final Bag.BagPartFactory partFactory = f.getBagPartFactory();
final List<File> payload = getPayloadFiles();
// write the bagit.txt
b.putBagFile(partFactory.createBagItTxt());
// write the manifest
final StringBuffer manifestCopy = new StringBuffer();
final File manifestFile = new File("manifest-md5.txt");
final FileOutputStream manifestOS = new FileOutputStream(manifestFile);
try {
final ManifestWriter manifestWriter = f.getBagPartFactory().createManifestWriter(manifestOS);
for (File payloadFile : payload) {
payloadSize += payloadFile.length();
final String filename = "data/" + payloadFile.getName();
final String fixity =
MessageDigestHelper.generateFixity(payloadFile, Manifest.Algorithm.MD5);
manifestCopy.append(fixity + " " + filename + "\n");
manifestWriter.write(filename, fixity);
}
manifestWriter.close();
b.addFileAsTag(manifestFile);
} finally {
manifestOS.close();
}
// write the bag-info.txt
final File bagInfoFile = new File("bag-info.txt");
final FileOutputStream bagInfoOS = new FileOutputStream(bagInfoFile);
try {
final BagInfoTxtWriter bagInfoWriter =
f.getBagPartFactory().createBagInfoTxtWriter(bagInfoOS, "UTF-8");
bagInfo.write(bagInfoWriter);
bagInfoOS.close();
b.addFileAsTag(bagInfoFile);
} finally {
bagInfoOS.close();
}
// write the aptrust-info.txt
final File aptrustInfoFile = new File("aptrust-info.txt");
final FileOutputStream aptrustInfoOS = new FileOutputStream(aptrustInfoFile);
try {
final BagItTxtWriter aptrustInfoWriter =
f.getBagPartFactory().createBagItTxtWriter(aptrustInfoOS, "UTF-8");
aptrustInfoWriter.write("Title", aptrustInfo.getTitle());
aptrustInfoWriter.write("Access", aptrustInfo.getAccess());
aptrustInfoOS.close();
b.addFileAsTag(aptrustInfoFile);
} finally {
aptrustInfoOS.close();
}
b.addFilesToPayload(payload);
b.write(new FileSystemWriter(f), file);
for (File payloadFile : payload) {
freePayloadFile(payloadFile);
}
manifestFile.delete();
aptrustInfoFile.delete();
bagInfoFile.delete();
if (tar) {
final BagSummary result = tarDirectory(file, manifestCopy.toString(), payloadSize);
FileUtils.deleteDirectory(file);
return result;
} else {
return new BagSummary(file, null, manifestCopy.toString(), payloadSize);
}
}