/**
* Rename annotation
*
* @param outputAS output annotation set
* @param oldType old annotation name
* @param newType new annotation name
*/
private void renameAnnotations(AnnotationSet outputAS, String oldType, String newType) {
AnnotationSet tmpAnatomyAS = outputAS.get(oldType);
for (Annotation tmpAnn : tmpAnatomyAS) {
Long startOffset = tmpAnn.getStartNode().getOffset();
Long endOffset = tmpAnn.getEndNode().getOffset();
AnnotationSet existingAS = outputAS.getCovering(newType, startOffset, endOffset);
// If we've already got an annotation of the same name in the same place, don't add a new one
// just delete the old one
if (existingAS.isEmpty()) {
FeatureMap tmpFm = tmpAnn.getFeatures();
FeatureMap fm = Factory.newFeatureMap();
fm.putAll(tmpFm);
try {
outputAS.add(startOffset, endOffset, newType, fm);
outputAS.remove(tmpAnn);
} catch (InvalidOffsetException ie) {
// shouldn't happen
}
} else {
outputAS.remove(tmpAnn);
}
}
}
public void doit(
gate.Document doc,
Map<String, AnnotationSet> bindings,
gate.AnnotationSet annotations,
gate.AnnotationSet inputAS,
gate.AnnotationSet outputAS,
gate.creole.ontology.Ontology ontology)
throws JapeException {
// your RHS Java code will be embedded here ...
String category = (String) doc.getFeatures().get("category");
Annotation mention = tagAnnots.iterator().next();
String pName = (String) mention.getFeatures().get("class");
OntoManager om = OntoManager.getInstance();
ProductClass catClass = om.getProductClass(category);
ProductClass pClass = om.getProductClass(pName);
boolean sameCat =
pClass
.getOntClass()
.hasSuperClass(catClass.getOntClass()); // TODO: refactor to used direct method
if (!sameCat) {
outputAS.remove(mention);
}
}