/**
* Update the specified settings object, with the parameters set in this panel.
*
* @param settings the Settings to update. Cannot be <code>null</code>.
*/
public void updateTo(Model model, Settings settings) {
settings.imp = imp;
// Crop cube
settings.tstart = Math.round(Float.parseFloat(jTextFieldTStart.getText()));
settings.tend = Math.round(Float.parseFloat(jTextFieldTEnd.getText()));
settings.xstart = Math.round(Float.parseFloat(jTextFieldXStart.getText()));
settings.xend = Math.round(Float.parseFloat(jTextFieldXEnd.getText()));
settings.ystart = Math.round(Float.parseFloat(jTextFieldYStart.getText()));
settings.yend = Math.round(Float.parseFloat(jTextFieldYEnd.getText()));
settings.zstart = Math.round(Float.parseFloat(jTextFieldZStart.getText()));
settings.zend = Math.round(Float.parseFloat(jTextFieldZEnd.getText()));
// Image info
settings.dx = Float.parseFloat(jTextFieldPixelWidth.getText());
settings.dy = Float.parseFloat(jTextFieldPixelHeight.getText());
settings.dz = Float.parseFloat(jTextFieldVoxelDepth.getText());
settings.dt = Float.parseFloat(jTextFieldTimeInterval.getText());
settings.width = imp.getWidth();
settings.height = imp.getHeight();
settings.nslices = imp.getNSlices();
settings.nframes = imp.getNFrames();
// Units
model.setPhysicalUnits(jLabelUnits1.getText(), jLabelUnits4.getText());
// Roi
Roi roi = imp.getRoi();
if (null != roi) {
settings.polygon = roi.getPolygon();
}
// File info
if (null != imp.getOriginalFileInfo()) {
settings.imageFileName = imp.getOriginalFileInfo().fileName;
settings.imageFolder = imp.getOriginalFileInfo().directory;
}
}
/** Fill the text fields with parameters grabbed from specified ImagePlus. */
public void getFrom(ImagePlus imp) {
this.imp = imp;
if (null == imp) {
jLabelImageName.setText("No image selected.");
impValid = false;
return;
}
if (imp.getType() == ImagePlus.COLOR_RGB) {
// We do not know how to process RGB images
jLabelImageName.setText(imp.getShortTitle() + " is RGB: invalid.");
impValid = false;
return;
}
jLabelImageName.setText("Target: " + imp.getShortTitle());
jTextFieldPixelWidth.setText(String.format("%g", imp.getCalibration().pixelWidth));
jTextFieldPixelHeight.setText(String.format("%g", imp.getCalibration().pixelHeight));
jTextFieldVoxelDepth.setText(String.format("%g", imp.getCalibration().pixelDepth));
if (imp.getCalibration().frameInterval == 0) {
jTextFieldTimeInterval.setText("1");
jLabelUnits4.setText("frame");
} else {
jTextFieldTimeInterval.setText(String.format("%g", imp.getCalibration().frameInterval));
jLabelUnits4.setText(imp.getCalibration().getTimeUnit());
}
jLabelUnits1.setText(imp.getCalibration().getXUnit());
jLabelUnits2.setText(imp.getCalibration().getYUnit());
jLabelUnits3.setText(imp.getCalibration().getZUnit());
Roi roi = imp.getRoi();
if (null == roi) roi = new Roi(0, 0, imp.getWidth(), imp.getHeight());
Rectangle boundingRect = roi.getBounds();
jTextFieldXStart.setText("" + (boundingRect.x));
jTextFieldYStart.setText("" + (boundingRect.y));
jTextFieldXEnd.setText("" + (boundingRect.width + boundingRect.x - 1));
jTextFieldYEnd.setText("" + (boundingRect.height + boundingRect.y - 1));
jTextFieldZStart.setText("" + 0);
jTextFieldZEnd.setText("" + (imp.getNSlices() - 1));
jTextFieldTStart.setText("" + 0);
jTextFieldTEnd.setText("" + (imp.getNFrames() - 1));
impValid = true;
}
private void initGUI() {
try {
this.setPreferredSize(new java.awt.Dimension(266, 476));
setLayout(null);
{
jLabelImageName = new JLabel();
jLabelImageName.setBounds(10, 14, 245, 17);
this.add(jLabelImageName);
jLabelImageName.setText("Select an image, and press refresh.");
jLabelImageName.setFont(BIG_FONT);
}
{
jLabelCheckCalibration = new JLabel();
jLabelCheckCalibration.setBounds(10, 107, 93, 13);
this.add(jLabelCheckCalibration);
jLabelCheckCalibration.setText("Calibration settings:");
jLabelCheckCalibration.setFont(SMALL_FONT);
}
{
jLabelPixelWidth = new JLabel();
jLabelPixelWidth.setBounds(63, 131, 55, 13);
this.add(jLabelPixelWidth);
jLabelPixelWidth.setText("Pixel width:");
jLabelPixelWidth.setFont(SMALL_FONT);
}
{
jLabelPixelHeight = new JLabel();
jLabelPixelHeight.setBounds(58, 151, 60, 13);
this.add(jLabelPixelHeight);
jLabelPixelHeight.setText("Pixel height:");
jLabelPixelHeight.setFont(SMALL_FONT);
}
{
jLabelVoxelDepth = new JLabel();
jLabelVoxelDepth.setBounds(58, 171, 60, 13);
this.add(jLabelVoxelDepth);
jLabelVoxelDepth.setText("Voxel depth:");
jLabelVoxelDepth.setFont(SMALL_FONT);
}
{
jLabelTimeInterval = new JLabel();
jLabelTimeInterval.setBounds(52, 191, 66, 13);
this.add(jLabelTimeInterval);
jLabelTimeInterval.setText("Time interval:");
jLabelTimeInterval.setFont(SMALL_FONT);
}
{
jTextFieldPixelWidth = new JNumericTextField();
jTextFieldPixelWidth.setBounds(128, 130, 40, 15);
this.add(jTextFieldPixelWidth);
jTextFieldPixelWidth.setFont(SMALL_FONT);
}
{
jTextFieldPixelHeight = new JNumericTextField();
jTextFieldPixelHeight.setBounds(128, 150, 40, 15);
this.add(jTextFieldPixelHeight);
jTextFieldPixelHeight.setFont(SMALL_FONT);
}
{
jTextFieldVoxelDepth = new JNumericTextField();
jTextFieldVoxelDepth.setBounds(128, 170, 40, 15);
this.add(jTextFieldVoxelDepth);
jTextFieldVoxelDepth.setFont(SMALL_FONT);
}
{
jTextFieldTimeInterval = new JNumericTextField();
jTextFieldTimeInterval.setBounds(128, 190, 40, 15);
this.add(jTextFieldTimeInterval);
jTextFieldTimeInterval.setFont(SMALL_FONT);
}
{
jLabelUnits1 = new JLabel();
jLabelUnits1.setBounds(178, 131, 77, 13);
this.add(jLabelUnits1);
jLabelUnits1.setText("units");
jLabelUnits1.setFont(SMALL_FONT);
}
{
jLabelUnits2 = new JLabel();
jLabelUnits2.setBounds(178, 151, 77, 13);
this.add(jLabelUnits2);
jLabelUnits2.setText("units");
jLabelUnits2.setFont(SMALL_FONT);
}
{
jLabelUnits3 = new JLabel();
jLabelUnits3.setBounds(178, 171, 77, 13);
this.add(jLabelUnits3);
jLabelUnits3.setText("units");
jLabelUnits3.setFont(SMALL_FONT);
}
{
jLabelUnits4 = new JLabel();
jLabelUnits4.setBounds(178, 191, 78, 13);
this.add(jLabelUnits4);
jLabelUnits4.setText("units");
jLabelUnits4.setFont(SMALL_FONT);
}
{
jLabelCropSetting = new JLabel();
jLabelCropSetting.setBounds(10, 237, 111, 13);
this.add(jLabelCropSetting);
jLabelCropSetting.setText("Crop settings (in pixels, 0-based):");
jLabelCropSetting.setFont(SMALL_FONT);
}
{
jLabelX = new JLabel();
jLabelX.setBounds(58, 262, 7, 13);
this.add(jLabelX);
jLabelX.setText("X");
jLabelX.setFont(SMALL_FONT);
}
{
jLabelY = new JLabel();
jLabelY.setBounds(58, 285, 7, 13);
this.add(jLabelY);
jLabelY.setText("Y");
jLabelY.setFont(SMALL_FONT);
}
{
jLabelZ = new JLabel();
jLabelZ.setBounds(58, 308, 6, 13);
this.add(jLabelZ);
jLabelZ.setText("Z");
jLabelZ.setFont(SMALL_FONT);
}
{
jTextFieldXStart = new JNumericTextField();
jTextFieldXStart.setLocation(78, 260);
this.add(jTextFieldXStart);
jTextFieldXStart.setSize(40, 18);
jTextFieldXStart.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldXStart.setFont(SMALL_FONT);
}
{
jTextFieldYStart = new JNumericTextField();
jTextFieldYStart.setLocation(78, 283);
this.add(jTextFieldYStart);
jTextFieldYStart.setSize(40, 18);
jTextFieldYStart.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldYStart.setFont(SMALL_FONT);
}
{
jTextFieldZStart = new JNumericTextField();
jTextFieldZStart.setBounds(78, 306, 40, 18);
this.add(jTextFieldZStart);
jTextFieldZStart.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldZStart.setFont(SMALL_FONT);
}
{
jLabelTo1 = new JLabel();
jLabelTo1.setBounds(146, 262, 9, 13);
this.add(jLabelTo1);
jLabelTo1.setText("to");
jLabelTo1.setFont(SMALL_FONT);
}
{
jLabelTo2 = new JLabel();
jLabelTo2.setBounds(146, 285, 9, 13);
this.add(jLabelTo2);
jLabelTo2.setText("to");
jLabelTo2.setFont(SMALL_FONT);
}
{
jLabelTo3 = new JLabel();
jLabelTo3.setBounds(146, 308, 9, 13);
this.add(jLabelTo3);
jLabelTo3.setText("to");
jLabelTo3.setFont(SMALL_FONT);
}
{
jTextFieldXEnd = new JNumericTextField();
jTextFieldXEnd.setBounds(178, 260, 40, 18);
this.add(jTextFieldXEnd);
jTextFieldXEnd.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldXEnd.setFont(SMALL_FONT);
}
{
jTextFieldYEnd = new JNumericTextField();
jTextFieldYEnd.setBounds(178, 283, 40, 18);
this.add(jTextFieldYEnd);
jTextFieldYEnd.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldYEnd.setFont(SMALL_FONT);
}
{
jTextFieldZEnd = new JNumericTextField();
jTextFieldZEnd.setBounds(178, 306, 40, 18);
this.add(jTextFieldZEnd);
jTextFieldZEnd.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldZEnd.setFont(SMALL_FONT);
}
{
jLabelT = new JLabel();
jLabelT.setBounds(58, 332, 7, 13);
this.add(jLabelT);
jLabelT.setText("T");
jLabelT.setFont(SMALL_FONT);
}
{
jTextFieldTStart = new JNumericTextField();
jTextFieldTStart.setBounds(78, 330, 40, 18);
this.add(jTextFieldTStart);
jTextFieldTStart.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldTStart.setFont(SMALL_FONT);
}
{
jLabelTo4 = new JLabel();
jLabelTo4.setBounds(146, 332, 9, 13);
this.add(jLabelTo4);
jLabelTo4.setText("to");
jLabelTo4.setFont(SMALL_FONT);
}
{
jTextFieldTEnd = new JNumericTextField();
jTextFieldTEnd.setBounds(178, 330, 40, 18);
this.add(jTextFieldTEnd);
jTextFieldTEnd.setPreferredSize(TEXTFIELD_DIMENSION);
jTextFieldTEnd.setFont(SMALL_FONT);
}
{
jButtonRefresh = new JButton();
jButtonRefresh.setBounds(10, 422, 108, 29);
this.add(jButtonRefresh);
jButtonRefresh.setText("Refresh source");
jButtonRefresh.setToolTipText(TOOLTIP);
jButtonRefresh.setFont(SMALL_FONT);
jButtonRefresh.addActionListener(
new ActionListener() {
public void actionPerformed(ActionEvent e) {
imp = WindowManager.getCurrentImage();
getFrom(imp);
fireAction(IMAGEPLUS_REFRESHED);
}
});
}
} catch (Exception e) {
e.printStackTrace();
}
}
/** Fill the text fields with the parameters grabbed in the {@link Settings} argument. */
public void echoSettings(Model model, Settings settings) {
jLabelImageName.setText(settings.imp.getTitle());
jTextFieldPixelWidth.setText("" + settings.dx);
jTextFieldPixelHeight.setText("" + settings.dy);
jTextFieldVoxelDepth.setText("" + settings.dz);
jTextFieldTimeInterval.setText("" + settings.dt);
jLabelUnits1.setText(model.getSpaceUnits());
jLabelUnits2.setText(model.getSpaceUnits());
jLabelUnits3.setText(model.getSpaceUnits());
jLabelUnits4.setText(model.getTimeUnits());
jTextFieldXStart.setText("" + settings.xstart);
jTextFieldYStart.setText("" + settings.ystart);
jTextFieldXEnd.setText("" + settings.xend);
jTextFieldYEnd.setText("" + settings.yend);
jTextFieldZStart.setText("" + settings.zstart);
jTextFieldZEnd.setText("" + settings.zend);
jTextFieldTStart.setText("" + settings.tstart);
jTextFieldTEnd.setText("" + settings.tend);
}