private void initRunButton() { // Run Button //////////////////////////////////////////// runButton = new PushButton(); RootPanel.get("runButton").add(runButton); runButton.setEnabled(false); runButton.addClickHandler(new RunClickHandler()); }
private void initAddFilesButton() { // Add files button produces a dialog addFileButton = new PushButton( "", new ClickHandler() { @Override public void onClick(final ClickEvent event) { final int clientWidth = Window.getClientWidth(); final int clientHeight = Window.getClientHeight(); final int popupWidth = clientWidth * 3 / 4; final int popupHeight = clientHeight * 3 / 4; final int posX = (clientWidth - popupWidth) / 2; final int posY = (clientHeight - popupHeight) / 2; final FileTreeDialog dialog = new FileTreeDialog(popupWidth, popupHeight); dialog.setPopupPosition(posX, posY); dialog.setSelectedFilesListener( new SelectedFilesListener() { @Override public void selectedFiles(final FileInfo[] info) { files.addFiles(info); } }); dialog.show(); } }); addFileButton.setEnabled(false); RootPanel.get("addFileButton").add(addFileButton); }
/** * The actual function that does the grunt work of making the editor visible if it is expanded, * and hiding it when it is not. Tests whether the editor was visible previously and changes * visibility only if there was a change. * * @param editorVisible Whether the editor should be made visible. * @param errorMessageVisible Whether the editor error message should be made visible instead of * the editor. */ private void setEditorVisible(boolean editorVisible, boolean errorMessageVisible) { if (this.editorVisible != editorVisible) { saveButton.setVisible(editorVisible && this.editorEnabled); for (Element e : editorElements) { DOM.setStyleAttribute(e, "display", editorVisible ? "" : "none"); } if (editorVisible) { // We are becoming visible. We load list of fixed/variable mods so the controls are ready // when the user needs them if (fixedMods.getAllowedValues() == null || fixedMods.getAllowedValues().size() == 0) { loadModificationAllowedValues(); } } } this.editorVisible = editorVisible; if (this.editorErrorMessageVisible != errorMessageVisible) { DOM.setStyleAttribute( DOM.getElementById("parameterEditorDisabledMessage"), "display", errorMessageVisible ? "" : "none"); } this.editorErrorMessageVisible = errorMessageVisible; }
public SimpleParamsEditorPanel( final ServiceAsync serviceAsync, final HidesPageContentsWhileLoading contentsHiding, Map<String, ClientUser> userInfo) { this.serviceAsync = serviceAsync; this.userInfo = userInfo; selectionController = new ParamSetSelectionController(serviceAsync); selectionController.setContentsHiding(contentsHiding); validationController = new ValidationController(serviceAsync, selectionController); validationController.setContentsHiding(contentsHiding); editorElements = new ArrayList(); contentsHiding.hidePageContentsWhileLoading(); serviceAsync.login( "", "", new AsyncCallback<Boolean>() { // TODO: real login public void onFailure(Throwable caught) { contentsHiding.showPageContents(); handleGlobalError(caught); } public void onSuccess(Boolean result) { contentsHiding.showPageContentsAfterLoad(); } }); HorizontalPanel hp = new HorizontalPanel(); RootPanel paramsSelectorPanel = RootPanel.get("paramsSelector"); paramsSelectorPanel.add(hp); selector = new ParamsSelector(); selectionController.setSelector(selector); selectionController.refresh(); hp.add(selector); // save buttons ////////////////////////////////////////////////////////// PushButton button; hp.add(saveButton = new PushButton("Save...")); saveButton.addStyleName(ACTION_LINK); saveButton.addStyleName(SPACE_AFTER); saveButton.addClickListener( new ClickListener() { public void onClick(Widget widget) { save(); } }); saveButton.setVisible(editorVisible); buttons.add(saveButton); hp.add(button = new PushButton("Preview...")); button.addStyleName(ACTION_LINK); button.addStyleName(SPACE_AFTER); button.addClickListener( new ClickListener() { public void onClick(Widget widget) { preview(); } }); buttons.add(button); hp.add(deleteButton = new PushButton("Delete...")); deleteButton.addStyleName(ACTION_LINK); deleteButton.addStyleName(SPACE_AFTER); deleteButton.addClickListener( new ClickListener() { public void onClick(Widget widget) { delete(); } }); buttons.add(deleteButton); // description, initially hidden ///////////////////////////////////////////// HTMLPanel description; paramsSelectorPanel.add( description = new HTMLPanel("<I>This is a description of the ParameterSet.</I>")); description.setSize("500px", "50px"); description.setStyleName("dottedBorder"); description.setVisible(false); /// Existing DOM ////////////////////////////////////////////////////////////// // Grab the existing DOM for the parameter rows. ExistingDOMPanel edp = new ExistingDOMPanel("paramRow"); /// database /////////////////////////////////////////// { ExistingDOMPanel dbrow = new ExistingDOMPanel("paramDbRow"); Label label = new Label("Database:"); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); editorElements.add(dbrow.append("database", "paramDbLabel", label, editorVisible)); final ValidationPanel vp = new ValidationPanel(2); dlb = new DatabaseListBox("sequence.database", userInfo); final HorizontalPanel p = new HorizontalPanel(); p.add(dlb); // dlb.setStyleName("spaceAfter"); PushButton pb = new PushButton("Add or Review Database..."); pb.addStyleName(ACTION_LINK); pb.setTitle( "Click here to review the selected database and potentially modify it for your own needs."); pb.addClickListener( new ClickListener() { public void onClick(Widget widget) { popupDbCurator(); } }); validationController.add(dlb, "sequence.database", vp); p.add(pb); // Add undeployer link if enabled. serviceAsync.isDatabaseUndeployerEnabled( new AsyncCallback<Boolean>() { public void onFailure(Throwable caught) { // Do nothing, do not add undeploy link. throw new RuntimeException( "Can not determine if database undeployer is enabled", caught); } public void onSuccess(Boolean result) { if (result.booleanValue()) { PushButton du = new PushButton("Undeploy Database"); du.addStyleName(ACTION_LINK); du.setTitle("Click here to undeploy database from search engines."); du.addClickListener(new DatabaseUndeploymentAction(serviceAsync, dlb)); p.add(du); } } }); editorElements.add(dbrow.append("database", "paramDbEntry", p, editorVisible)); editorElements.add(dbrow.append("database", "paramDbValidation", vp, editorVisible)); } /// enzyme ///////////////////////////////////////////// { Label label = new Label("Protease:"); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); editorElements.add(edp.append("enzyme", LABEL1, label, editorVisible)); ValidationPanel vp = new ValidationPanel(2); ProteaseListBox tb; validationController.add(tb = new ProteaseListBox("sequence.enzyme"), "sequence.enzyme", vp); editorElements.add(edp.append("enzyme", ENTRY1, tb, editorVisible)); Label label1 = new Label("Missed Cleavages:"); label1.setStyleName(PARAMS_LABEL); label1.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); ValidatableTextBox tdb = new ValidatableTextBox("sequence.missed_cleavages") { protected ClientValue getValueFromString(String value) { if ((value == null) || (value.length() == 0)) { return null; } try { return new ClientInteger(value); } catch (NumberFormatException ignore) { ClientValidationList list = new ClientValidationList(); final ClientValidation cv = new ClientValidation( "Not a number: " + value, "sequence.missed_cleavages", ClientValidation.SEVERITY_ERROR); list.add(cv); validationController.update("sequence.missed_cleavages", list); return null; } } protected String setValueAsString(ClientValue object) { return object.toString(); } public void setAllowedValues(List<? extends ClientValue> values) { // unused. } public String getAllowedValuesParam() { return null; // no allowed values. } }; tdb.setVisibleLength(5); editorElements.add(edp.append("enzyme", LABEL2, label1, editorVisible)); editorElements.add(edp.append("enzyme", ENTRY2, tdb, editorVisible)); validationController.add(tdb, "sequence.missed_cleavages", vp); editorElements.add(edp.append("enzyme", VALIDATION, vp, editorVisible)); } /// modifications ///////////////////////////////////////// { ValidationPanel vp = new ValidationPanel(2); Label label = new Label("Fixed Modifications:"); label.setStyleName(PARAMS_LABEL); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); editorElements.add(edp.append(MODIFICATIONS, LABEL1, label, editorVisible)); // fixed mods label fixedMods = new ModificationsLabel( ModificationSelectionEditor.FIXED_PARAM_NAME, ModificationSelectionEditor.FIXED_PARAM_NAME); ModificationSelectionEditor fixedModsEditor = new ModificationSelectionEditor( ModificationSelectionEditor.FIXED_PARAM_NAME, ModificationSelectionEditor.FIXED_MOD_TYPE); fixedMods.setEditor(fixedModsEditor); validationController.add(fixedMods, ModificationSelectionEditor.FIXED_PARAM_NAME, vp); editorElements.add(edp.append(MODIFICATIONS, ENTRY1, fixedMods, editorVisible)); // variable mods label varMods = new ModificationsLabel( ModificationSelectionEditor.VARIABLE_PARAM_NAME, ModificationSelectionEditor.VARIABLE_PARAM_NAME); ModificationSelectionEditor varModsEditor = new ModificationSelectionEditor( ModificationSelectionEditor.VARIABLE_PARAM_NAME, ModificationSelectionEditor.VARIABLE_MOD_TYPE); varMods.setEditor(varModsEditor); validationController.add(varMods, ModificationSelectionEditor.VARIABLE_PARAM_NAME, vp); Label label1 = new Label("Variable Modifications:"); label1.setStyleName(PARAMS_LABEL); label1.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); editorElements.add(edp.append(MODIFICATIONS, LABEL2, label1, editorVisible)); editorElements.add(edp.append(MODIFICATIONS, ENTRY2, varMods, editorVisible)); editorElements.add(edp.append(MODIFICATIONS, VALIDATION, vp, editorVisible)); } /// tolerances ///////////////////////////////////////// { Label label = new Label("Peptide Tolerance:"); label.setStyleName(PARAMS_LABEL); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); editorElements.add(edp.append(TOLERANCES, LABEL1, label, editorVisible)); ValidationPanel vp = new ValidationPanel(2); ToleranceBox peptideTolerance; validationController.add( peptideTolerance = new ToleranceBox("tolerance.peptide"), "tolerance.peptide", vp); editorElements.add(edp.append(TOLERANCES, ENTRY1, peptideTolerance, editorVisible)); Label label1 = new Label("Fragment Tolerance:"); editorElements.add(edp.append(TOLERANCES, LABEL2, label1, editorVisible)); label1.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label1.setStyleName(PARAMS_LABEL); ToleranceBox fragmentTolerance; validationController.add( fragmentTolerance = new ToleranceBox("tolerance.fragment"), "tolerance.fragment", vp); editorElements.add(edp.append(TOLERANCES, ENTRY2, fragmentTolerance, editorVisible)); editorElements.add(edp.append(TOLERANCES, VALIDATION, vp, editorVisible)); } /// instrument ///////////////////////////////////////// ValidationPanel instrumentVp; { Label label = new Label("Instrument:"); editorElements.add(edp.append(INSTRUMENT, LABEL1, label, editorVisible)); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); instrumentVp = new ValidationPanel(2); InstrumentListBox lb; validationController.add(lb = new InstrumentListBox(INSTRUMENT), INSTRUMENT, instrumentVp); editorElements.add(edp.append(INSTRUMENT, ENTRY1, lb, editorVisible)); editorElements.add(edp.append(INSTRUMENT, VALIDATION, instrumentVp, editorVisible)); } /// spectrum extraction params ///////////////////////////////////////// { Label label = new Label("Spectrum extraction:"); editorElements.add(edp.append(INSTRUMENT, LABEL2, label, editorVisible)); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); SpectrumExtractionEditor ed = new SpectrumExtractionEditor(); validationController.add(ed, "extractMsnSettings", instrumentVp); editorElements.add(edp.append(INSTRUMENT, ENTRY2, ed, editorVisible)); } /// scaffold params ///////////////////////////////////////// { ExistingDOMPanel row = new ExistingDOMPanel("scaffoldRow"); Label label = new Label("Scaffold:"); editorElements.add(row.append(SCAFFOLD_SETTINGS, "scaffoldLabel", label, editorVisible)); label.setHorizontalAlignment(HasHorizontalAlignment.ALIGN_RIGHT); label.setStyleName(PARAMS_LABEL); ValidationPanel vp = new ValidationPanel(2); ScaffoldSettingsEditor ed = new ScaffoldSettingsEditor(); validationController.add(ed, SCAFFOLD_SETTINGS, vp); editorElements.add(row.append(SCAFFOLD_SETTINGS, "scaffoldEntry", ed, editorVisible)); editorElements.add(row.append(SCAFFOLD_SETTINGS, "scaffoldValidation", vp, editorVisible)); } validationController.setEnabled(false); selectionController.refresh(); validationController.addChangeListener( new ChangeListener() { public void onChange(Widget widget) { for (PushButton button : buttons) { button.setEnabled(isValid()); } } }); }
private void setDeleteVisible(boolean editorEnabled) { deleteButton.setVisible(editorEnabled); }
private void loadCompleted() { // The load completed, enable buttons runButton.setEnabled(true); addFileButton.setEnabled(true); }