public void onDocument(Document document, String xpath) throws XmlParserException {
if (xpath.equals(XPATH_IPEAK)) {
Node node = document.getFirstChild();
// check whether we're getting the correct ipeak
Node typeattribute = node.getAttributes().getNamedItem(PeakMLWriter.TYPE);
if (typeattribute == null)
throw new XmlParserException("Failed to locate the type attribute.");
if (!typeattribute.getNodeValue().equals(PeakMLWriter.TYPE_BACKGROUNDION))
throw new XmlParserException(
"IPeak ("
+ typeattribute.getNodeValue()
+ ") is not of type: '"
+ PeakMLWriter.TYPE_BACKGROUNDION
+ "'");
// parse this node as a mass chromatogram
BackgroundIon<? extends Peak> backgroundion = parseBackgroundIon(node);
if (backgroundion != null) peaks.add(backgroundion);
//
if (_listener != null && result.header != null && result.header.getNrPeaks() != 0)
_listener.update((100. * index++) / result.header.getNrPeaks());
} else if (xpath.equals(XPATH_HEADER)) {
result.header = parseHeader(document.getFirstChild());
}
}
public void onDocument(Document document, String xpath) throws XmlParserException {
if (xpath.equals(XPATH_IPEAK)) {
Node node = document.getChildNodes().item(0);
// check whether we're getting the correct ipeak
Node typeattribute = node.getAttributes().getNamedItem(PeakMLWriter.TYPE);
if (typeattribute == null)
throw new XmlParserException("Failed to locate a type attribute.");
// ...
// IPeak peak = (_loadall ? parseIPeak(node) : parseCentroid(node));
IPeak peak = parseIPeak(node);
if (peak != null) _listener.onIPeak(peak);
} else if (xpath.equals(XPATH_HEADER)) {
Header header = parseHeader(document.getFirstChild());
_listener.onHeader(header);
}
}
public void onDocument(Document document, String xpath) throws XmlParserException {
if (xpath.equals(XPATH_IPEAK)) {
Node node = document.getChildNodes().item(0);
// check whether we're getting the correct ipeak
Node typeattribute = node.getAttributes().getNamedItem(PeakMLWriter.TYPE);
if (typeattribute == null
|| !typeattribute.getNodeValue().equals(PeakMLWriter.TYPE_PEAKSET))
throw new XmlParserException("Failed to locate a type attribute.");
// parse this node as a mass chromatogram
IPeakSet<? extends IPeak> peakset = parsePeakSet(node);
if (peakset != null) peaks.add(peakset);
//
if (_listener != null && result.header != null && result.header.getNrPeaks() != 0)
_listener.update((100. * index++) / result.header.getNrPeaks());
} else if (xpath.equals(XPATH_HEADER)) {
result.header = parseHeader(document.getFirstChild());
}
}
public void onDocument(Document document, String xpath) throws XmlParserException {
if (xpath.equals(XPATH_HEADER)) {
result.header = parseHeader(document.getFirstChild());
throw new XmlParserException("finished");
}
}